Dictyostelium discoideum cDNA Clone CHC421

Sequence CHC421

CTGTTGGCCT ACTGGATGCA AGTAATCTCT CATTTGAAGA GTTGTATAGA
AACGGATACA ATATGGTATT ACAAAAACAT GGTGATTTAT TATACAATAA
TCTAAAGAAG ATGGTCGATA AACATTTGAA AGCGGTTGCT AAAACTGTAT
CAGAATCAAT CGATGAAAAG TTTCTACTAG AATTAAACTC GAGTTGGATC
AATCACAAGA CTTCAATGTT AATGATTAGA GATATCTTGA TGTATATGGA
TAGAAACTAT GTTAAACAAA ATAATCTCTC TAGTGTTTTT GATCTTGGAC
TTTACCTTTT CAGAGATAAT GTGGCTCATT GTTCAACAAT TAAAGATAGA
TTATTAAATA CTCTCTTATC AATGGTACAA AAAGAAAGAG AAGGTGAAGT
TATTGATAGA ATTTTAATAA AAAATATAGT TCAAATGTTA ATTGATTTAG
GAGTTAATTC TAAAAATGTA TATATTGAAG ACTTTGAAAA ACCATTGTTA
TTAAAGACAT CATCACATTA TCAAGCACAA TCACAAACTC TCATTCAAAC
ATGTAGTTGT CCAGATTATA TGAAAAAGGT TGAAATTTGC TTAAAAGAAG
AGTTGGAAAG ---------- TATGGGTACC GCAGAAATTA AAGCAAACTT
CCNTTCGAAA TCTCACGAAC TTCAAGTTTC CTCCTATCAA ATGGTCATCT
TATTACTCTT TAATGACCAA TCGAAATTAA CCTTTAAAGA GATTGCTGAT
CAAACTGGTA TTCCAACTAT TGATTTAAAG AGAAATCTTT TAGCTTTAAC
AAATCCAAAG AATAAAATTT TAGATAGAGA ATTACCATCA ACAACATCAT
CAACAACAAC AACAACAACA ACAGCAACAT CATCATCAAC TTCAACTTCA
CCATCTAGTA GTTCATCTTC AATCTCCACT CCAACACCAA GTAAATCAAT
TGATGAATCC GATGTATTCG CTTTTAATAC TAAATTTAAG AGTAAATTAT
TCCGTGTTAA AGTTATGGCA GTCGTTCAAA AAGAAACACC AGTTGAAGAG
AAAGAAACTC GTGATAAAGT TGATGAAGAT AGAAAACATC AAATTGAAGC
TTCCATCGTT CGTATTATGA AAGCTCGTAA AACACTTGAA CACTCTAATC
TTGTCTCTGA AGTCATCAAG CAACTTCAAT CTCGTTTTGT TCCAAATCCA
GTCATTGTAA AGAAACGTAT CGAATCTTTA ATTNAAAGAG AATATCTTAA
AGNATCAAAA CAAGNACAGA AAGNATTTA

Translated Amino Acid Sequence CHC421

VGLLDASNLSFEELYRNGYNMVLQKHGDLLYNNLKKMVDKHLKAVAKTVSESIDEKFLLE
LNSSWINHKTSMLMIRDILMYMDRNYVKQNNLSSVFDLGLYLFRDNVAHCSTIKDRLLNT
LLSMVQKEREGEVIDRILIKNIVQMLIDLGVNSKNVYIEDFEKPLLLKTSSHYQAQSQTL
IQTCSCPDYMKKVEICLKEELE---

---MGTAEIKANFXSKSHELQVSSYQMVILLLFNDQSKLTFKEIADQTGIPTIDLKRNLL
ALTNPKNKILDRELPSTTSSTTTTTTTATSSSTSTSPSSSSSSISTPTPSKSIDESDVFA
FNTKFKSKLFRVKVMAVVQKETPVEEKETRDKVDEDRKHQIEASIVRIMKARKTLEHSNL
VSEVIKQLQSRFVPNPVIVKKRIESLIXREYLKXSKQXQKXF

Homology CHC421 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


CHC421 (CHC421Q) /CSM/CH/CHC4-A/CHC421Q.Seq.d/                       1590   0.0
VHH207 (VHH207Q) /CSM/VH/VHH2-A/VHH207Q.Seq.d/                       1025   0.0
VHG389 (VHG389Q) /CSM/VH/VHG3-D/VHG389Q.Seq.d/                        882   0.0
SSI609 (SSI609Q) /CSM/SS/SSI6-A/SSI609Q.Seq.d/                        704   0.0
SSC509 (SSC509Q) /CSM/SS/SSC5-A/SSC509Q.Seq.d/                        698   0.0
AFG826 (AFG826Q) /CSM/AF/AFG8-B/AFG826Q.Seq.d/                        698   0.0
VHB307 (VHB307Q) /CSM/VH/VHB3-A/VHB307Q.Seq.d/                        696   0.0
CFK287 (CFK287Q) /CSM/CF/CFK2-D/CFK287Q.Seq.d/                        684   0.0
VHQ327 (VHQ327Q) /CSM/VH/VHQ3-B/VHQ327Q.Seq.d/                        676   0.0
CHQ457 (CHQ457Q) /CSM/CH/CHQ4-C/CHQ457Q.Seq.d/                        666   0.0

Homology CHC421 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AF144717|AF144717.1 Dictyostelium discoideum CulB mRNA, comp...    50   4e-07  3
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 ma...    34   0.002  17
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) co...    36   0.002  18
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 ma...    34   0.002  16
AE015937|AE015937.1 Clostridium tetani E88, section 2 of 10 ...    36   0.004  14
AC122544|AC122544.1 Genomic sequence for Lycopersicon escule...    54   0.006  1
AW398090|AW398090.1 EST297973 L. pennellii trichome, Cornell...    54   0.006  1
BI503545|BI503545.1 BB170031B10G04.5 Bee Brain Normalized/Su...    54   0.006  1
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             34   0.006  27
AC016728|AC016728.4 Homo sapiens BAC clone RP11-363G6 from Y...    40   0.006  4

Homology CHC421 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54NZ5) RecName: Full=Cullin-3;          Short=CUL-3; AltName: ...   393   e-107
(Q9C9L0) RecName: Full=Cullin-3B;          Short=AtCUL3b;  &AC01...   203   2e-50
AM484063_2(AM484063|pid:none) Vitis vinifera contig VV78X066416....   200   1e-49
AK230392_1(AK230392|pid:none) Arabidopsis thaliana mRNA for cull...   200   2e-49
(Q9ZVH4) RecName: Full=Cullin-3A;          Short=AtCUL3a;  &A863...   200   2e-49
AK129174_1(AK129174|pid:none) Mus musculus premature mRNA for mK...   195   4e-48
(Q9JLV5) RecName: Full=Cullin-3;          Short=CUL-3;  &AF12973...   195   4e-48
(Q13618) RecName: Full=Cullin-3;          Short=CUL-3;  &AB38392...   195   4e-48
(B5DF89) RecName: Full=Cullin-3;                                      195   4e-48
(Q6DE95) RecName: Full=Cullin-3-A;          Short=CUL-3-A;  &BC0...   195   4e-48

Homology CHC421 vs Genome