Dictyostelium discoideum cDNA Clone CFF622

Sequence CFF622

AAATTTAAAT CACAAACGAA AGAAATAAAA CATGTCCGCA AGTAATAAAG
ATGACCAACT CATGAAAAAT GAGTTCGAAA GTACCTACGA CAAAATTGTC
GATTCATTCG ACAATATGGA GCTCCCAAAG GATCTCTTAA GAGGTATCTA
CTCCTATGGT TTTGAAAAGC CATCAGCCAT CCAACAAAGA GCTATCATTC
CACTCTCAAA AGGTTTTGAT ATTATTGCCC AAGCTCAATC TGGTACTGGT
AAAACTGCTA CCTTCACCGT TGGTATCTTA TCTAGAATTG ATATTTCAGT
CCTCAAATGT CAAGCTCTCA TCATTGCCCC AACTCGTGAA CTTGCTCAAC
AAATTCAAAA GGTTGTTTTA GCTTTAGGTG AATATTTACA CATTAAATCA
TACGCATGTA TTGGTGGTAC TAAGATTACT GATGATATTC AAGCCCTCCA
AAGTGGTGTA CACGTAGTTG TCGGTACCCC AGGTCGTGTC TTTGAAATGT
TATCACGTGG TATCATTAAT CGTGACACCA TTAGAATTTT CTGTCTTGAT
GGAGCTGATG AAATGTTATC ACGTGGTTTC AAGGATCAAA TCTATGAAAT
TTTCAGATTC TTACCAAAGA ---------- TTCTCTGCCA CCATGACTGA
TGAAACTTTA GGTATCACAA GCAAATTCAT GCAAAACCCA GTCAGTATCC
TCGTCAAAAA GGATGAATTA ACCCTTGAAG GTATTAGACA ATTCTACGTC
AACGTTGGTG TTGAACAAGG TAAATTTGAA GTTTTAACCG ATCTCTACGA
AACCCTCTCT ATCACTCAAT CCGTTATTTT CTGTAACACC CGTAGAAAGG
TCGATTGGTT AACAAGCAAA ATGACCGAAC AAAAATTCAC CGTCTCATCA
ACTCACGGTG ACCAAAAGGA TCGTGATGGT ATCTTACAAG CTTTCCGTTC
TGGTGCTACT CGTGTCCTCA TCACCACCGA TCTCTTAGCT CGTGGTATTG
ATGTCCAACA AGTATCACTC GTTATCAACT TTGATTTACC AACCAACATT
GAAAATTACA TTCATCGTAT CGGTCGTTCA GGTCGTTTCG GTCGTAAGGG
TGTTGCCATC AACTTTATCA CTGACGCTGA AAGAGGTCAA ATCGATGAAT
TATCTCGTCA TTACAATACC TACATTGCCG AAATGCCACA AGACATTGGA
AGTTTCCTCT AAACGAGTTC CAAAAATGGT TTATAGTTCA GTTGGTCCCC
ATTTGGTGAG GGCCATAGGG TTTATAAATC GACCGCCCCC CTCCCTATCC
AATACTCACA CCACAACAAC ATATTTCATC CGCTCATTAT AAAAACAACA
AAAACTTCAA CNCTTTTACA CCTCGT

Translated Amino Acid Sequence CFF622

nlnhkrkk*NMSASNKDDQLMKNEFESTYDKIVDSFDNMELPKDLLRGIYSYGFEKPSAI
QQRAIIPLSKGFDIIAQAQSGTGKTATFTVGILSRIDISVLKCQALIIAPTRELAQQIQK
VVLALGEYLHIKSYACIGGTKITDDIQALQSGVHVVVGTPGRVFEMLSRGIINRDTIRIF
CLDGADEMLSRGFKDQIYEIFRFLPK---

---FSATMTDETLGITSKFMQNPVSILVKKDELTLEGIRQFYVNVGVEQGKFEVLTDLYE
TLSITQSVIFCNTRRKVDWLTSKMTEQKFTVSSTHGDQKDRDGILQAFRSGATRVLITTD
LLARGIDVQQVSLVINFDLPTNIENYIHRIGRSGRFGRKGVAINFITDAERGQIDELSRH
YNTYIAEMPQDIGSFL*tsskngl*fswspfgeghrvykstaplpiqyshhnnifhplii
kttktstllhl

Homology CFF622 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


CFF622 (CFF622Q) /CSM/CF/CFF6-A/CFF622Q.Seq.d/                       2662   0.0
SFE202 (SFE202Q) /CSM/SF/SFE2-A/SFE202Q.Seq.d/                       1473   0.0
CFF657 (CFF657Q) /CSM/CF/CFF6-C/CFF657Q.Seq.d/                       1473   0.0
VFI417 (VFI417Q) /CSM/VF/VFI4-A/VFI417Q.Seq.d/                       1471   0.0
SFG770 (SFG770Q) /CSM/SF/SFG7-C/SFG770Q.Seq.d/                       1469   0.0
CFE621 (CFE621Q) /CSM/CF/CFE6-A/CFE621Q.Seq.d/                       1469   0.0
SFG686 (SFG686Q) /CSM/SF/SFG6-D/SFG686Q.Seq.d/                       1467   0.0
CFH334 (CFH334Q) /CSM/CF/CFH3-B/CFH334Q.Seq.d/                       1467   0.0
VFD768 (VFD768Q) /CSM/VF/VFD7-C/VFD768Q.Seq.d/                       1465   0.0
SFC409 (SFC409Q) /CSM/SF/SFC4-A/SFC409Q.Seq.d/                       1465   0.0

Homology CFF622 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


U78759|U78759.1 Dictyostelium discoideum IfdA (ifdA) mRNA, p...  1455   0.0    2
X80796|X80796.1 S.pombe eIF-4A mRNA for translation initiati...   115   5e-79  7
L40627|L40627.1 Schizosaccharomyces pombe cell cycle control...   115   6e-79  7
AL132828|AL132828.1 S.pombe chromosome I cosmid c1006.            115   5e-72  8
AX537016|AX537016.1 Sequence 617 from Patent WO02064766.           58   3e-43  6
AX536980|AX536980.1 Sequence 581 from Patent WO02064766.           58   3e-43  6
D84472|D84472.1 Candida albicans DNA for translation initiat...    60   6e-43  6
CF245450|CF245450.1 Fcylcold195 Fragilariopsis cylindrus SMA...   113   9e-38  3
AU011976|AU011976.1 Schizosaccharomyces pombe cDNA, clone sp...    66   1e-37  5
AY098962|AY098962.1 Arabidopsis thaliana AT3g13920/MDC16_4 m...    94   7e-37  7

Homology CFF622 vs Protein

Sequences producing significant alignments:                      (bits) Value


U78759_1(U78759|pid:none) Dictyostelium discoideum IfdA (ifdA) m...   382   0.0
CP001142_274(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...   259   e-138
JO843767_1(JO843767|pid:none) TSA: Amblyomma maculatum Am-12062 ...   261   e-138
(Q9CAI7) RecName: Full=Eukaryotic initiation factor 4A-3;       ...   257   e-137
FQ857297_19(FQ857297|pid:none) Piriformospora indica PIRI_contig...   259   e-135
GQ865547_1(GQ865547|pid:none) Prunus persica cultivar Loring DEA...   256   e-134
HB811396_1(HB811396|pid:none) Sequence 160610 from Patent EP2090...   256   e-134
(P47943) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...   256   e-134
DQ667140_1(DQ667140|pid:none) Callinectes sapidus eukaryotic ini...   263   e-134
(P41376) RecName: Full=Eukaryotic initiation factor 4A-1;       ...   255   e-134

Homology CFF622 vs Genome