Homology CFF495 vs Protein
Query= CFF495 (CFF495Q) /CSM/CF/CFF4-D/CFF495Q.Seq.d/
(1312 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 80 3e-13
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 79 6e-13
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 74 1e-11
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 72 9e-11
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 70 2e-10
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 70 4e-10
(Q54YG2) RecName: Full=Extracellular matrix protein A; AltName: ... 70 4e-10
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 69 5e-10
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 68 1e-09
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 62 1e-07
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 58 1e-06
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 58 1e-06
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 56 5e-06
CP002565_2680(CP002565|pid:none) Methanosaeta concilii GP-6, com... 54 3e-05
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 52 8e-05
CP002830_1702(CP002830|pid:none) Myxococcus fulvus HW-1, complet... 49 5e-04
AB001327_1(AB001327|pid:none) Halocynthia roretzi mRNA for HrNot... 47 0.002
BC163556_1(BC163556|pid:none) Danio rerio tenascin C, mRNA (cDNA... 47 0.003
BC151843_1(BC151843|pid:none) Homo sapiens tenascin C, mRNA (cDN... 46 0.004
AB210038_1(AB210038|pid:none) Homo sapiens mRNA for TNC variant ... 46 0.005
X56160_1(X56160|pid:none) Human mRNA for tenascin. 46 0.005
AK304015_1(AK304015|pid:none) Homo sapiens cDNA FLJ60213 complet... 46 0.005
A32160(I38337;A32160;S14015;S16166;S50208;S49354) tenascin-C - h... 45 0.007
GQ334450_84(GQ334450|pid:none) Cyanophage PSS2, complete genome.... 45 0.007
(Q80YX1) RecName: Full=Tenascin; Short=TN; AltName: Ful... 45 0.012
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 45 0.012
AL732556_3(AL732556|pid:none) Mouse DNA sequence from clone RP24... 45 0.012
AL732556_1(AL732556|pid:none) Mouse DNA sequence from clone RP24... 45 0.012
X08030_1(X08030|pid:none) Chicken mRNA fragment for tenascin (cT... 44 0.016
BC071284_1(BC071284|pid:none) Danio rerio tenascin W, mRNA (cDNA... 44 0.021
AB292627_1(AB292627|pid:none) Lethenteron camtschaticum LjNotchA... 44 0.027
CP002830_2822(CP002830|pid:none) Myxococcus fulvus HW-1, complet... 43 0.035
CP002271_7155(CP002271|pid:none) Stigmatella aurantiaca DW4/3-1,... 43 0.046
HM208332_9(HM208332|pid:none) Oncorhynchus mykiss clone BAC20-C1... 42 0.060
AM746676_9122(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 42 0.060
FQ377874_518(FQ377874|pid:none) Mycoplasma mycoides subsp. capri... 42 0.060
CP000113_6294(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 42 0.060
EU596506_1(EU596506|pid:none) Rattus norvegicus tenascin C (Tnc)... 42 0.060
AF483029_1(AF483029|pid:none) Boltenia villosa tenascin-x like p... 42 0.060
AB077987_1(AB077987|pid:none) Halocynthia roretzi mRNA for HrDel... 41 0.13
Z98877_9(Z98877|pid:none) Caenorhabditis elegans YAC Y69H2, comp... 41 0.18
(Q6X0I2) RecName: Full=Vitellogenin receptor; Short=SiV... 41 0.18
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 41 0.18
AE001417_1(AE001417|pid:none) Plasmodium falciparum 3D7 chromoso... 40 0.23
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 40 0.23
AE001362_166(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 40 0.23
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor; 40 0.30
AB031297_1(AB031297|pid:none) Sarcophaga peregrina mRNA for 120-... 40 0.39
AE014134_2736(AE014134|pid:none) Drosophila melanogaster chromos... 39 0.51
EZ422207_1(EZ422207|pid:none) TSA: Glossina morsitans morsitans ... 39 0.51
AL110498_8(AL110498|pid:none) Caenorhabditis elegans YAC Y64G10A... 39 0.51
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg... 39 0.51
T27283(T27283)hypothetical protein Y64G10A.f - Caenorhabditis el... 39 0.51
(Q7TN75) RecName: Full=Retrotransposon-derived protein PEG10; Al... 39 0.66
BX004856_1(BX004856|pid:none) Zebrafish DNA sequence from clone ... 39 0.67
DQ917572_1(DQ917572|pid:none) Parhyale hawaiensis notch protein ... 39 0.67
GQ505858_9(GQ505858|pid:none) Salmo salar clone BAC CHORI214-129... 39 0.67
DQ096731_1(DQ096731|pid:none) Danio rerio tenascin-C (TNC) mRNA,... 39 0.87
AF315555_1(AF315555|pid:none) Caenorhabditis briggsae notch-like... 39 0.87
(P16144) RecName: Full=Integrin beta-4; AltName: Full=GP150; Alt... 38 1.1
BC143738_1(BC143738|pid:none) Homo sapiens integrin, beta 4, mRN... 38 1.1
A36429(S12380;S08465;A36429;S06963;B33534)integrin beta-4 chain ... 38 1.1
AF011375_1(AF011375|pid:none) Homo sapiens integrin variant beta... 38 1.1
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso... 38 1.1
BC126411_1(BC126411|pid:none) Homo sapiens integrin, beta 4, mRN... 38 1.1
AF115477_1(AF115477|pid:none) Giardia intestinalis genotype A-II... 38 1.1
(Q61555) RecName: Full=Fibrillin-2; Flags: Precursor; 38 1.1
AK304792_1(AK304792|pid:none) Homo sapiens cDNA FLJ60224 complet... 38 1.1
U66541_2(U66541|pid:none) Human beta4-integrin (ITGB4) and alter... 38 1.1
BC118916_1(BC118916|pid:none) Homo sapiens integrin, beta 4, mRN... 38 1.1
GU954552_1(GU954552|pid:none) Euperipatoides kanangrensis notch ... 38 1.1
AF159157_1(AF159157|pid:none) Hydra vulgaris head-activator bind... 38 1.1
A57278(A57278) fibrillin-2 precursor - mouse &L39790_1(L39790|p... 38 1.1
X52186_1(X52186|pid:none) Human mRNA for integrin beta-4 subunit. 38 1.1
X53587_1(X53587|pid:none) Human mRNA for integrin beta 4. 38 1.1
BC109238_1(BC109238|pid:none) Homo sapiens integrin, beta 4, mRN... 38 1.1
AC115598_37(AC115598|pid:none) Dictyostelium discoideum chromoso... 38 1.5
GQ505860_1(GQ505860|pid:none) Salmo salar clone BAC CHORI214-68O... 38 1.5
AL034559_42(AL034559|pid:none) Plasmodium falciparum MAL3P7, com... 38 1.5
AY265358_1(AY265358|pid:none) Homo sapiens glycoprotein receptor... 37 1.9
AF491458_1(AF491458|pid:none) Caenorhabditis briggsae strain PB8... 37 1.9
CP002271_1358(CP002271|pid:none) Stigmatella aurantiaca DW4/3-1,... 37 1.9
AE014296_1456(AE014296|pid:none) Drosophila melanogaster chromos... 37 1.9
AF491460_1(AF491460|pid:none) Caenorhabditis briggsae strain AF1... 37 1.9
(P98157) RecName: Full=Low-density lipoprotein receptor-related ... 37 1.9
AF491463_1(AF491463|pid:none) Caenorhabditis briggsae strain VT8... 37 1.9
AC007556_2(AC007556|pid:none) Homo sapiens BAC clone RP11-18C9 f... 37 1.9
AF036687_2(AF036687|pid:none) Caenorhabditis elegans cosmid C08G... 37 1.9
(P98164) RecName: Full=Low-density lipoprotein receptor-related ... 37 1.9
AY265357_1(AY265357|pid:none) Homo sapiens glycoprotein receptor... 37 1.9
BT032860_1(BT032860|pid:none) Drosophila melanogaster RE24628 fu... 37 1.9
T32497(T32497)hypothetical protein C08G9.2 - Caenorhabditis eleg... 37 1.9
FJ147085_1(FJ147085|pid:none) Fenneropenaeus chinensis Kazal-typ... 37 2.5
AM746676_2642(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 37 3.3
AF374376_24(AF374376|pid:none) Oikopleura dioica clone BAC clone... 37 3.3
AF369477_1(AF369477|pid:none) Mus musculus strain 129P3/J lipopr... 37 3.3
AF058427_1(AF058427|pid:none) Homo sapiens lipoprotein receptor-... 37 3.3
AL929358_25(AL929358|pid:none) Plasmodium falciparum strain 3D7,... 37 3.3
(Q91ZX7) RecName: Full=Prolow-density lipoprotein receptor-relat... 37 3.3
S25111(S25111;S32554) alpha-2-macroglobulin receptor precursor -... 37 3.3
A55035(A55035;S45034) cysteine-rich protein CRP1 - earthworm (En... 37 3.3
(Q07954) RecName: Full=Prolow-density lipoprotein receptor-relat... 37 3.3
GU385844_1(GU385844|pid:none) Amphimedon queenslandica Delta5 mR... 36 4.3
CP000826_4316(CP000826|pid:none) Serratia proteamaculans 568, co... 36 4.3
AF491459_1(AF491459|pid:none) Caenorhabditis briggsae strain HK1... 36 4.3
AF399011_284(AF399011|pid:none) Pseudomonas phage phiKZ, complet... 36 4.3
AM180255_37(AM180255|pid:none) Lawsonia intracellularis PHE/MN1-... 36 5.6
(O75077) RecName: Full=Disintegrin and metalloproteinase domain-... 36 5.6
(P49013) RecName: Full=Fibropellin-3; AltName: Full=Epidermal gr... 36 5.6
EF065674_1(EF065674|pid:none) Ophiophagus hannah metalloproteina... 36 5.6
AK296844_1(AK296844|pid:none) Homo sapiens cDNA FLJ53382 complet... 36 5.6
AY627686_1(AY627686|pid:none) Didelphis virginiana megalin mRNA,... 35 7.4
AB559578_1(AB559578|pid:none) Bombyx mori mRNA for Bm8 interacti... 35 7.4
AY040345_1(AY040345|pid:none) Danio rerio coagulation factor VII... 35 7.4
AE014297_4265(AE014297|pid:none) Drosophila melanogaster chromos... 35 7.4
U03272_1(U03272|pid:none) Human fibrillin-2 mRNA, complete cds. 35 7.4
(P17053) RecName: Full=G surface protein, allelic form 168; Flag... 35 7.4
AB218869_1(AB218869|pid:none) Rhyparobia maderae LpR mRNA for Li... 35 7.4
FJ001337_1(FJ001337|pid:none) Platynereis dumerilii clone BAC CH... 35 7.4
AE014297_4263(AE014297|pid:none) Drosophila melanogaster chromos... 35 7.4
HM165175_1(HM165175|pid:none) Drosophila melanogaster isolate ZW... 35 7.4
CP002271_1402(CP002271|pid:none) Stigmatella aurantiaca DW4/3-1,... 35 7.4
A54105(A54105;S17063;S31101)fibrillin-2 precursor - human 35 7.4
AE014297_4264(AE014297|pid:none) Drosophila melanogaster chromos... 35 7.4
AM055942_182(AM055942|pid:none) Toxoplasma gondii RH, genomic DN... 35 7.4
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor; 35 9.6
HM165180_1(HM165180|pid:none) Drosophila melanogaster isolate ZW... 35 9.6
HM165169_1(HM165169|pid:none) Drosophila melanogaster isolate I3... 35 9.6
AK131126_1(AK131126|pid:none) Mus musculus premature mRNA for mF... 35 9.6
(Q9NZR2) RecName: Full=Low-density lipoprotein receptor-related ... 35 9.6
CP001715_3537(CP001715|pid:none) Candidatus Accumulibacter phosp... 35 9.6
HM165162_1(HM165162|pid:none) Drosophila melanogaster isolate I1... 35 9.6
AM050637_1(AM050637|pid:none) Blattella germanica mRNA for vitel... 35 9.6
FQ310507_2(FQ310507|pid:none) Dicentrarchus labrax chromosome se... 35 9.6
A23475(A23475)G surface protein - Paramecium primaurelia 35 9.6
HM165174_1(HM165174|pid:none) Drosophila melanogaster isolate ZW... 35 9.6
HM165167_1(HM165167|pid:none) Drosophila melanogaster isolate I2... 35 9.6
GU385841_1(GU385841|pid:none) Amphimedon queenslandica Delta2 mR... 35 9.6
BC168401_1(BC168401|pid:none) Synthetic construct Mus musculus c... 35 9.6
HM165171_1(HM165171|pid:none) Drosophila melanogaster isolate I3... 35 9.6
BT033001_1(BT033001|pid:none) Drosophila melanogaster IP21817 fu... 35 9.6
CP000113_6723(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 35 9.6
HM165168_1(HM165168|pid:none) Drosophila melanogaster isolate I3... 35 9.6
HM165163_1(HM165163|pid:none) Drosophila melanogaster isolate I2... 35 9.6
CR954212_161(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 35 9.6
BC172897_1(BC172897|pid:none) Synthetic construct Homo sapiens c... 35 9.6
HM165157_1(HM165157|pid:none) Drosophila melanogaster isolate I0... 35 9.6
(Q9QXX0) RecName: Full=Protein jagged-1; Short=Jagged1;... 35 9.6
>A26838(A26838)prestalk protein precursor - slime mold (Dictyostelium
discoideum)
Length = 1046
Score = 80.1 bits (196), Expect = 3e-13
Identities = 62/225 (27%), Positives = 86/225 (38%), Gaps = 52/225 (23%)
Frame = +2
Query: 632 CILXPIDCDDNDECTVDECSITSGCKHTVCPNLXKSGKTEIKCV---------------- 763
C+ P+ CDD + CTVD CS ++GC HT + TE KC
Sbjct: 331 CVHTPLPCDDKNPCTVDSCSNSTGCCHTPINVDDNNACTEDKCTQSGGVTHTPINCDDNN 390
Query: 764 ----------NGKCQTRVK----SPCELMTCPNDTICIENYNNXKNLTICLPIECSINN- 898
G C T ++ +PC + +C N T C+ N + C +C+ N
Sbjct: 391 KCTVDSCSNSTGCCHTPIRCDDNNPCTVDSCSNSTGCVHTPINVDDNNACTEDKCTQNGG 450
Query: 899 -------CDDGNGXTIDSCNFQTGFC-DHLLCPNK---YLDPITN-----HTTIPICENN 1030
CDD N T+DSC+ TG C L C + +D +N HT I + +NN
Sbjct: 451 VTHTPIACDDKNACTVDSCSNSTGCCHTPLKCDDNNACTVDSCSNSTGCVHTPINVDDNN 510
Query: 1031 -----KCVNKTLXNCEYFKCDHPNEICIEXKITXAPKCVHFXSGC 1150
KC CD N C + + CVH C
Sbjct: 511 ACTEDKCTQSGGVTHTPISCDDKNP-CTIDSCSNSTGCVHTPMSC 554
Score = 79.0 bits (193), Expect = 6e-13
Identities = 66/227 (29%), Positives = 86/227 (37%), Gaps = 54/227 (23%)
Frame = +2
Query: 632 CILXPIDCDDNDECTVDECSITSGCKHTVCPNLXKSGKTEIKCV---------------- 763
C P+ CDDN+ CTVD CS ++GC HT + TE KC
Sbjct: 691 CCHTPLSCDDNNACTVDSCSNSTGCVHTPINVDDNNACTEDKCTQNGGVTHTPIACDDKN 750
Query: 764 ----------NGKCQTRVK----SPCELMTCPNDTICIENYNNXKNLTICLPIECSIN-- 895
G C T +K +PC + +C N T C+ N + C +C+ N
Sbjct: 751 ACTVDSCSNSTGCCHTPLKCDDNNPCTVDSCSNSTGCVHTPMNVDDNNACTEDKCTQNGG 810
Query: 896 ------NCDDGNGXTIDSCNFQTGFCDH--LLCPNK---YLDPITN-----HTTIPICEN 1027
CDD N T DSC+ TG C H + C + D +N HT I +N
Sbjct: 811 VTHTPIRCDDLNSCTADSCSNSTG-CVHTPINCDDNNKCTADSCSNSTGCCHTPISCDDN 869
Query: 1028 NKCVNKTLXNCEYFKCDH------PNEICIEXKITXAPKCVHFXSGC 1150
N C + N C H N C E K T + H GC
Sbjct: 870 NPCTVDSCSNST--GCCHTPINVDDNNPCTEDKCTQSGGVTHTPIGC 914
Score = 78.6 bits (192), Expect = 8e-13
Identities = 59/217 (27%), Positives = 79/217 (36%), Gaps = 44/217 (20%)
Frame = +2
Query: 632 CILXPIDCDDNDECTVDECSITSGCKHTVCPNLXKSGKTEIKCV---------------- 763
C P+ CDDN+ CTVD CS ++GC HT + + TE KC+
Sbjct: 115 CCHTPLSCDDNNPCTVDSCSNSTGCCHTPINVVVHNACTEDKCIQLGVVTHTPIACDDKN 174
Query: 764 ----------NGKCQTRV----KSPCELMTCPNDTICIENYNNXKNLTICLPIECSINN- 898
G C T + +PC + +C N T C+ N + C +C+ +
Sbjct: 175 ACTVDSCSNSTGCCHTPLSCDDNNPCTVDSCSNSTGCVHTPINVDDHNACTEDKCTQSGG 234
Query: 899 -------CDDGNGXTIDSCNFQTGFCDHLLCPNKYLDPITNHTTIPICENNKCVNKTLXN 1057
CDD N T DSC+ TG C HT I +NN C + N
Sbjct: 235 VTHTPIACDDKNACTADSCSNSTGSC---------------HTPITCDDNNACTVDSCSN 279
Query: 1058 CEYFKCDH------PNEICIEXKITXAPKCVHFXSGC 1150
C H N C E K T + H C
Sbjct: 280 ST--GCCHTPINVDDNNACTEDKCTQSGGVTHTPIAC 314
Score = 78.6 bits (192), Expect = 8e-13
Identities = 63/243 (25%), Positives = 91/243 (37%), Gaps = 52/243 (21%)
Frame = +2
Query: 632 CILXPIDCDDNDECTVDECSITSGCKHTVCPNLXKSGKTEIKCV---------------- 763
C+ P+ CDDN+ CTVD CS ++GC HT + TE KC
Sbjct: 619 CVHTPLTCDDNNPCTVDSCSNSTGCCHTPINVDDHNACTEDKCTQSGGVTHTPIACDDKN 678
Query: 764 ----------NGKCQTRV----KSPCELMTCPNDTICIENYNNXKNLTICLPIECSINN- 898
G C T + + C + +C N T C+ N + C +C+ N
Sbjct: 679 ACTVDSCSNSTGCCHTPLSCDDNNACTVDSCSNSTGCVHTPINVDDNNACTEDKCTQNGG 738
Query: 899 -------CDDGNGXTIDSCNFQTGFC-DHLLCPNK---YLDPITN-----HTTIPICENN 1030
CDD N T+DSC+ TG C L C + +D +N HT + + +NN
Sbjct: 739 VTHTPIACDDKNACTVDSCSNSTGCCHTPLKCDDNNPCTVDSCSNSTGCVHTPMNVDDNN 798
Query: 1031 -----KCVNKTLXNCEYFKCDHPNEICIEXKITXAPKCVHFXSGCLSXSDLNCQSLTSPN 1195
KC +CD N C + + CVH C + S ++
Sbjct: 799 ACTEDKCTQNGGVTHTPIRCDDLNS-CTADSCSNSTGCVHTPINCDDNNKCTADSCSNST 857
Query: 1196 SRC 1204
C
Sbjct: 858 GCC 860
Score = 75.5 bits (184), Expect = 6e-12
Identities = 61/231 (26%), Positives = 79/231 (34%), Gaps = 44/231 (19%)
Frame = +2
Query: 644 PIDCDDNDECTVDECSITSGCKHTVCPNLXKSGKTEIKCVNGKCQTRV------------ 787
PI CDDN+ CTVD CS ++GC HT + TE KC T
Sbjct: 263 PITCDDNNACTVDSCSNSTGCCHTPINVDDNNACTEDKCTQSGGVTHTPIACDDKNACTV 322
Query: 788 ------------------KSPCELMTCPNDTICIENYNNXKNLTICLPIECSIN------ 895
K+PC + +C N T C N + C +C+ +
Sbjct: 323 DSCSNSTGCVHTPLPCDDKNPCTVDSCSNSTGCCHTPINVDDNNACTEDKCTQSGGVTHT 382
Query: 896 --NCDDGNGXTIDSCNFQTGFCDHLLCPNKYLDPITNHTTIPICENNKCVNKTLXNCEYF 1069
NCDD N T+DSC+ TG C HT I +NN C + N
Sbjct: 383 PINCDDNNKCTVDSCSNSTGCC---------------HTPIRCDDNNPCTVDSCSNST-- 425
Query: 1070 KCDH------PNEICIEXKITXAPKCVHFXSGCLSXSDLNCQSLTSPNSRC 1204
C H N C E K T H C + S ++ C
Sbjct: 426 GCVHTPINVDDNNACTEDKCTQNGGVTHTPIACDDKNACTVDSCSNSTGCC 476
Score = 72.8 bits (177), Expect = 4e-11
Identities = 63/244 (25%), Positives = 87/244 (35%), Gaps = 53/244 (21%)
Frame = +2
Query: 632 CILXPIDCDDNDECTVDECSITSGCKHTVCPNLXKSGKTEIKCV---------------- 763
C PI CDDN+ CTVD CS ++GC HT + TE KC
Sbjct: 403 CCHTPIRCDDNNPCTVDSCSNSTGCVHTPINVDDNNACTEDKCTQNGGVTHTPIACDDKN 462
Query: 764 ----------NGKCQTRVK----SPCELMTCPNDTICIENYNNXKNLTICLPIECSIN-- 895
G C T +K + C + +C N T C+ N + C +C+ +
Sbjct: 463 ACTVDSCSNSTGCCHTPLKCDDNNACTVDSCSNSTGCVHTPINVDDNNACTEDKCTQSGG 522
Query: 896 ------NCDDGNGXTIDSCNFQTGFCDHLLCPNKYLDPITN----------HTTIP---- 1015
+CDD N TIDSC+ TG C H +P T+ H +
Sbjct: 523 VTHTPISCDDKNPCTIDSCSNSTG-CVHTPMSCDDRNPCTSDFCSWEKGCQHVALSCNDF 581
Query: 1016 -ICENNKCVNKTLXNCEYFKCDHPNEICIEXKITXAPKCVHFXSGCLSXSDLNCQSLTSP 1192
C + C N T CD N C + + CVH C + S ++
Sbjct: 582 NACTMDSCSNSTGCTHTPIACDDKN-ACTVDSCSNSTGCVHTPLTCDDNNPCTVDSCSNS 640
Query: 1193 NSRC 1204
C
Sbjct: 641 TGCC 644
Score = 70.1 bits (170), Expect = 3e-10
Identities = 56/200 (28%), Positives = 76/200 (38%), Gaps = 9/200 (4%)
Frame = +2
Query: 632 CILXPIDCDDNDECTVDECSITSGCKHTVCPNLXKSGKTEIKCVNGKCQTRVKSPCELMT 811
C PI CDDN+ CTVD CS ++GC H T + C + +PC + +
Sbjct: 91 CQHVPIACDDNNACTVDSCSNSTGCCH-----------TPLSCDD-------NNPCTVDS 132
Query: 812 CPNDTICIENYNNXKNLTICLPIEC--------SINNCDDGNGXTIDSCNFQTGFC-DHL 964
C N T C N C +C + CDD N T+DSC+ TG C L
Sbjct: 133 CSNSTGCCHTPINVVVHNACTEDKCIQLGVVTHTPIACDDKNACTVDSCSNSTGCCHTPL 192
Query: 965 LCPNKYLDPITNHTTIPICENNKCVNKTLXNCEYFKCDHPNEICIEXKITXAPKCVHFXS 1144
C + N T+ C N+ T N + DH C E K T + H
Sbjct: 193 SCDD------NNPCTVDSCSNSTGCVHTPINVD----DH--NACTEDKCTQSGGVTHTPI 240
Query: 1145 GCLSXSDLNCQSLTSPNSRC 1204
C + S ++ C
Sbjct: 241 ACDDKNACTADSCSNSTGSC 260
Score = 66.6 bits (161), Expect = 3e-09
Identities = 46/155 (29%), Positives = 64/155 (41%), Gaps = 11/155 (7%)
Frame = +2
Query: 644 PIDCDDNDECTVDECSITSGCKHTVCPNLXKSGKTEIKCVNGKCQTRVKSPCELMTCPND 823
PI C+DN+ CTVD CS ++GC H T +KC + +PC + +C N
Sbjct: 911 PIGCNDNNACTVDSCSNSTGCTH-----------TPMKCDD-------NNPCTIDSCSNS 952
Query: 824 TICIENYNNXKNLTICLPIECSINNC-------DDGNGXTIDSCNFQTGFCDHLLCPNKY 982
T C+ N + C C C DD N T+DSC TG + N
Sbjct: 953 TGCVHTPMNCDDGNFCTLDSCCSTGCTHTPIIIDDNNPCTVDSCCNSTGVVHTPVDCND- 1011
Query: 983 LDPITNHTTIPIC---ENNKCVNKTLXNCEYF-KC 1075
N T C + KC++ + C+ F KC
Sbjct: 1012 ----NNVLTCDYCSIKQGGKCIHVPMTQCKTFGKC 1042
Score = 65.1 bits (157), Expect = 9e-09
Identities = 50/178 (28%), Positives = 69/178 (38%), Gaps = 5/178 (2%)
Frame = +2
Query: 632 CILXPIDCDDNDECTVDECSITSGCKHTVCPNLXKSGKTEIKCVNGKCQTRVKSPCELMT 811
C PI+ +DNDECTVD C+ +G HT + T C+ GK V +
Sbjct: 43 CSNTPININDNDECTVDTCNPKTGISHTPVNCDDGNSYTADSCLCGKGCQHVP-----IA 97
Query: 812 CPNDTICIENYNNXKNLTICLPIECSINNCDDGNGXTIDSCNFQTGFCDHLLCPNKYLDP 991
C ++ C ++ N T C S CDD N T+DSC+ TG C
Sbjct: 98 CDDNNAC--TVDSCSNSTGCCHTPLS---CDDNNPCTVDSCSNSTGCC------------ 140
Query: 992 ITNHTTIPI-----CENNKCVNKTLXNCEYFKCDHPNEICIEXKITXAPKCVHFXSGC 1150
HT I + C +KC+ + CD N C + + C H C
Sbjct: 141 ---HTPINVVVHNACTEDKCIQLGVVTHTPIACDDKN-ACTVDSCSNSTGCCHTPLSC 194
Score = 52.0 bits (123), Expect = 8e-05
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Frame = +2
Query: 632 CILXPIDCDDNDECTVDECSITSGCKHTVCPNLXKSGK---TEIKCVNGKCQTRV----K 790
C P+ CDDN+ CT+D CS ++GC HT P G + C G T +
Sbjct: 931 CTHTPMKCDDNNPCTIDSCSNSTGCVHT--PMNCDDGNFCTLDSCCSTGCTHTPIIIDDN 988
Query: 791 SPCELMTCPNDTICIENYNNXKNLTICLPIECSINNCDDGNGXTIDSCNF-QTGFCDHL 964
+PC + +C N T + P++ C+D N T D C+ Q G C H+
Sbjct: 989 NPCTVDSCCNSTGVVHT-----------PVD-----CNDNNVLTCDYCSIKQGGKCIHV 1031
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 3,202,606,717
Number of extensions: 63650826
Number of successful extensions: 149051
Number of sequences better than 10.0: 148
Number of HSP's gapped: 147458
Number of HSP's successfully gapped: 248
Length of query: 437
Length of database: 1,732,582,204
Length adjustment: 135
Effective length of query: 302
Effective length of database: 1,010,438,449
Effective search space: 305152411598
Effective search space used: 305152411598
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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