Dictyostelium discoideum cDNA Clone CFE621

Sequence CFE621

GCATAAACGG TGAATACCTC GACTCCTAAA TCGATGAAGA CCGTAGCAAA
CTGCGATAAT TCACTTGAAT TGCAGCCTAC TGGGATAGTT GAAATGTTGA
ACGCACATGA TGACATCGGT CCTTTCGGAT TAGGTGTTAT ACTTGGGTGA
GAGTGGTCAA TTATTAAAAT TTAAATCACA AACGAAAGAA ATAAAACATG
TCCGCAAGTA ATAAAGATGA CCAACTCATG AAAAATGAGT TCGAAAGTAC
CTACGACAAA ATTGTCGATT CATTCGACAA TATGGAGCTC CCAAAGGATC
TCTTAAGAGG TATCTACTCC TATGGTTTTG AAAAGC---- ------ATTC
TCTGCCACCA TGACTGATGA AACTTTAGGT ATCACAAGCA AATTCATGCA
AAACCCAGTC AGTATCCTCG TCAAAAAGGA TGAATTAACC CTTGAAGGTA
TTAGACAATT CTACGTCAAC GTTGGTGTTG AACAAGGTAA ATTTGAAGTT
TTAACCGATC TCTACGAAAC CCTCTCTATC ACTCAATCCG TTATTTTCTG
TAACACCCGT AGAAAGGTCG ATTGGTTAAC AAGCAAAATG ACCGAACAAA
AATTCACCGT CTCATCAACT CACGGTGACC AAAAGGATCG TGATGGTATC
TTACAAGCTT TCCGTTCTGG TGCTACTCGT GTCCTCATCA CCACCGATCT
CTTAGCTCGT GGTATTGATG TCCAACAAGT ATCACTCGTT ATCAACTTTG
ATTTACCAAC CAACATTGAA AATTACATTC ATCGTATCGG TCGTTCAGGT
CGTTTCGGTC GTAAGGGTGT TGCCATCAAC TTTATCACTG ACGCTGAAAG
AGGTCAAATC GATGAATTAT CTCGTCATTA CAATACCTAC ATTGCCGAAA
TGCCACAAGA CATTGGAAGT TTCCTCTAAA CGAGTTCCAA AAATGGTTTA
TAGTTCAGTT GGTCCCCATT TGGTGAGGGC CATAGGGTTT ATAAATCGAC
CGCCCCCCTC CCTATCCAAT ACTCACACCA CAACAACATA TTTCATCCGC
TCATTATAAA AACAACAAAA ACTTCAACTC TTTTACACCT C

Translated Amino Acid Sequence CFE621

ingeylds*idedrsklr*ft*iaaywds*nvert**hrsfrircytwvrvvny*nlnhk
rkk*NMSASNKDDQLMKNEFESTYDKIVDSFDNMELPKDLLRGIYSYGFEK---

---FSATMTDETLGITSKFMQNPVSILVKKDELTLEGIRQFYVNVGVEQGKFEVLTDLYE
TLSITQSVIFCNTRRKVDWLTSKMTEQKFTVSSTHGDQKDRDGILQAFRSGATRVLITTD
LLARGIDVQQVSLVINFDLPTNIENYIHRIGRSGRFGRKGVAINFITDAERGQIDELSRH
YNTYIAEMPQDIGSFL*tsskngl*fswspfgeghrvykstaplpiqyshhnnifhplii
kttktstllhl

Homology CFE621 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


CFE621 (CFE621Q) /CSM/CF/CFE6-A/CFE621Q.Seq.d/                       2103   0.0
VFI417 (VFI417Q) /CSM/VF/VFI4-A/VFI417Q.Seq.d/                       1475   0.0
SFG770 (SFG770Q) /CSM/SF/SFG7-C/SFG770Q.Seq.d/                       1475   0.0
SFG686 (SFG686Q) /CSM/SF/SFG6-D/SFG686Q.Seq.d/                       1473   0.0
VFD768 (VFD768Q) /CSM/VF/VFD7-C/VFD768Q.Seq.d/                       1471   0.0
SFE202 (SFE202Q) /CSM/SF/SFE2-A/SFE202Q.Seq.d/                       1471   0.0
SFC409 (SFC409Q) /CSM/SF/SFC4-A/SFC409Q.Seq.d/                       1469   0.0
CFF657 (CFF657Q) /CSM/CF/CFF6-C/CFF657Q.Seq.d/                       1469   0.0
CFF622 (CFF622Q) /CSM/CF/CFF6-A/CFF622Q.Seq.d/                       1469   0.0
CFE834 (CFE834Q) /CSM/CF/CFE8-B/CFE834Q.Seq.d/                       1469   0.0

Homology CFE621 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


U78759|U78759.1 Dictyostelium discoideum IfdA (ifdA) mRNA, p...  1463   0.0    1
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.      313   3e-81  1
AY171066|AY171066.1 Dictyostelium discoideum extrachromosoma...   313   3e-81  1
V00192|V00192.1 Dictyostelium discoideum 5.8S ribosomal RNA.      297   2e-76  1
AF219103|AF219103.1 Dictyostelium purpureum 18S ribosomal RN...   270   4e-68  1
AF219102|AF219102.1 Dictyostelium giganteum 18S ribosomal RN...   270   4e-68  1
AF219101|AF219101.1 Dictyostelium dimigraformum 18S ribosoma...   268   2e-67  1
AF219107|AF219107.1 Polysphondylium violaceum 18S ribosomal ...   264   2e-66  1
AF351197|AF351197.1 Dictyostelium mucoroides 18S ribosomal R...   262   1e-65  1
AF351199|AF351199.1 Dictyostelium sphaerocephalum 18S riboso...   262   1e-65  1

Homology CFE621 vs Protein

Sequences producing significant alignments:                      (bits) Value


U78759_1(U78759|pid:none) Dictyostelium discoideum IfdA (ifdA) m...   381   e-104
FR823393_603(FR823393|pid:none) Neospora caninum Liverpool compl...   265   3e-69
AJ320155_1(AJ320155|pid:none) Toxoplasma gondii mRNA for eukaryo...   265   3e-69
DQ667140_1(DQ667140|pid:none) Callinectes sapidus eukaryotic ini...   263   1e-68
(A5DVM3) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...   261   5e-68
JI167879_1(JI167879|pid:none) TSA: Ascaris suum ASCF_2876_2362 m...   261   5e-68
(P27639) RecName: Full=Eukaryotic initiation factor 4A;         ...   261   6e-68
JO843767_1(JO843767|pid:none) TSA: Amblyomma maculatum Am-12062 ...   261   6e-68
CP001323_608(CP001323|pid:none) Micromonas sp. RCC299 chromosome...   259   2e-67
CP001142_274(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...   258   4e-67

Homology CFE621 vs Genome