Homology CFD643 vs DNA
Query= CFD643 (CFD643Q) /CSM/CF/CFD6-B/CFD643Q.Seq.d/
(977 letters)
Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum3.seq; ddbjhum4.seq;
ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq; ddbjhum9.seq;
/db/DDBJNEW.DATA/b/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/b/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod2.seq;
ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq;
ddbjrod8.seq; ddbjrod9.seq; /db/DDBJNEW.DATA/b/new_ddbjrod.seq;
ddbjmam.seq; /db/DDBJNEW.DATA/b/new_ddbjmam.seq; ddbjvrt1.seq;
ddbjvrt2.seq; ddbjvrt3.seq; /db/DDBJNEW.DATA/b/new_ddbjvrt.seq;
ddbjinv1.seq; ddbjinv2.seq; ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq;
/db/DDBJNEW.DATA/b/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln2.seq;
ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq; ddbjpln6.seq; ddbjpln7.seq;
ddbjpln8.seq; /db/DDBJNEW.DATA/b/new_ddbjpln.seq; ddbjbct1.seq;
ddbjbct2.seq; ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq;
ddbjbct7.seq; /db/DDBJNEW.DATA/b/new_ddbjbct.seq; ddbjvrl1.seq;
ddbjvrl2.seq; ddbjvrl3.seq; /db/DDBJNEW.DATA/b/new_ddbjvrl.seq;
ddbjphg.seq; /db/DDBJNEW.DATA/b/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/b/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq;
ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq;
ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq;
ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq;
ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq;
ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq;
ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq;
ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq; ddbjgss4.seq;
ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq;
ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq;
ddbjgss48.seq; ddbjgss49.seq; ddbjgss5.seq; ddbjgss50.seq;
ddbjgss51.seq; ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq;
ddbjgss55.seq; ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq;
ddbjgss59.seq; ddbjgss6.seq; ddbjgss60.seq; ddbjgss61.seq;
ddbjgss62.seq; ddbjgss63.seq; ddbjgss64.seq; ddbjgss65.seq;
ddbjgss66.seq; ddbjgss67.seq; ddbjgss68.seq; ddbjgss69.seq;
ddbjgss7.seq; ddbjgss70.seq; ddbjgss71.seq; ddbjgss72.seq;
ddbjgss73.seq; ddbjgss74.seq; ddbjgss75.seq; ddbjgss8.seq;
ddbjgss9.seq; /db/DDBJNEW.DATA/b/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/b/new_ddbjgss2.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg6.seq; ddbjhtg7.seq; ddbjhtg8.seq; ddbjhtg9.seq;
/db/DDBJNEW.DATA/b/new_ddbjhtg1.seq; ddbjpat1.seq; ddbjpat2.seq;
ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq; ddbjpat6.seq; ddbjpat7.seq;
ddbjpat8.seq; ddbjpat9.seq; /db/DDBJNEW.DATA/b/new_ddbjpat.seq;
ddbjsts1.seq; ddbjsts2.seq; ddbjsts3.seq;
/db/DDBJNEW.DATA/b/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/b/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/b/new_est_atha1.seq; est_btra1.seq;
/db/DDBJNEW.DATA/b/new_est_btra1.seq; est_cele1.seq;
/db/DDBJNEW.DATA/b/new_est_cele1.seq; est_crei1.seq; est_cint1.seq;
/db/DDBJNEW.DATA/b/new_est_cint1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/b/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/b/new_est_dmel1.seq; est_ggal1.seq;
/db/DDBJNEW.DATA/b/new_est_ggal1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/b/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/b/new_est_hum1.seq;
est_hvul1.seq; /db/DDBJNEW.DATA/b/new_est_hvul1.seq; est_lesc1.seq;
/db/DDBJNEW.DATA/b/new_est_lesc1.seq; est_mous1.seq; est_mous2.seq;
est_mous3.seq; /db/DDBJNEW.DATA/b/new_est_mous1.seq; est_mtru1.seq;
/db/DDBJNEW.DATA/b/new_est_mtru1.seq; est_osat1.seq;
/db/DDBJNEW.DATA/b/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/b/new_est_rnor1.seq; est_stro1.seq; est_taes1.seq;
/db/DDBJNEW.DATA/b/new_est_taes1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/b/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/b/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; /db/DDBJNEW.DATA/b/new_est_rest1.seq
31,773,783 sequences; U,072,735,791 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value N
U21880|U21880.1 Dictyostelium discoideum mitochondrion large... 634 0.0 2
D16466|D16466.1 Dictyostelium discoideum mitochondrial DNA. 634 0.0 5
AB000109|AB000109.1 Dictyostelium discoideum mitochondrial D... 634 0.0 7
AF295546|AF295546.1 Malawimonas jakobiformis mitochondrial D... 92 7e-97 13
AF166114|AF166114.1 Mesostigma viride chloroplast DNA, compl... 78 4e-49 14
M81884|M81884.1 Epifagus virginiana chloroplast, complete ge... 86 4e-49 12
AP004638|AP004638.1 Psilotum nudum chloroplast DNA, complete... 78 7e-49 12
X04465|X04465.1 Marchantia polymorpha chloroplast genome DNA. 78 2e-48 14
AP005672|AP005672.1 Physcomitrella patens subsp. patens chlo... 78 3e-47 12
AP000423|AP000423.1 Arabidopsis thaliana chloroplast genomic... 78 3e-46 12
Z00044|Z00044.1 Nicotiana tabacum chloroplast genome DNA. 78 4e-46 12
AJ316582|AJ316582.1 Atropa belladonna complete chloroplast g... 78 1e-45 11
AJ400848|AJ400848.1 Spinacia oleracea complete chloroplast g... 78 1e-45 10
AJ271079|AJ271079.2 Oenothera elata subsp. hookeri chloropla... 78 8e-45 12
AP002983|AP002983.1 Lotus corniculatus var. japonicus chloro... 78 2e-44 10
AJ506156|AJ506156.2 Amborella trichopoda chloroplast genomic... 78 6e-44 11
AY506529|AY506529.1 Zea mays strain NB mitochondrion, comple... 82 8e-43 11
U17009|U17009.2 Phytophthora infestans mitochondrion, comple... 98 3e-42 10
X15901|X15901.1 Oryza sativa complete chloroplast genome. 70 4e-42 10
AC144549|AC144549.1 Sorghum bicolor clone sorchlor map chlor... 70 6e-42 10
AB042240|AB042240.3 Triticum aestivum chloroplast DNA, compl... 70 2e-40 10
AJ428413|AJ428413.1 Calycanthus fertilis var. ferax complete... 70 2e-39 10
AF494278|AF494278.1 Chaetosphaeridium globosum chloroplast, ... 70 1e-38 12
K01868|K01868.1 Maize mitochondrial 26S rRNA gene and flanks. 82 4e-38 4
AK059254|AK059254.1 Oryza sativa (japonica cultivar-group) c... 82 1e-37 4
AF007261|AF007261.1 Reclinomonas americana mitochondrial DNA... 88 3e-37 9
AF193903|AF193903.1 Cafeteria roenbergensis mitochondrial DN... 88 2e-36 12
U87145|U87145.2 Toxoplasma gondii chloroplast, complete genome. 62 3e-36 11
M37274|M37274.1 Wheat mitochondrial 26S rRNA gene, complete ... 82 4e-36 4
X02559|X02559.1 Oenothera berteriana mitochondrial gene for ... 82 1e-35 4
Z11889|Z11889.1 T.aestivum mitochondrion rrn26 gene for rRNA... 82 2e-35 4
AY458645|AY458645.1 Uncultured bacterium 577 clone EBAC080-L... 96 2e-35 6
S60373|S60373.1 23S rRNA [Leuconostoc paramesenteroides, Gen... 78 8e-35 4
Z67753|Z67753.1 Odontella sinensis complete chloroplast genome. 80 1e-34 12
AF494279|AF494279.1 Chaetosphaeridium globosum mitochondrial... 76 7e-34 6
AF137379|AF137379.1 Nephroselmis olivacea chloroplast DNA, c... 70 6e-33 10
BD107237|BD107237.1 Base sequence for detecting Lactobacillu... 78 1e-32 4
X71839|X71839.1 R.palustris 16S rRNA gene. 80 2e-32 4
X68035|X68035.1 Weissella confusa gene for 23S rRNA. 78 2e-32 4
X87283|X87283.1 B.lupini 23S rRNA gene, DSM 30140. 80 2e-32 4
X71840|X71840.1 B.japonicum 16S rRNA gene. 80 2e-32 4
Z75491|Z75491.1 L.lactis rrn operon, 23S rRNA gene. 78 2e-32 4
Z75490|Z75490.1 L.dextranicum rrn operon, 23S rRNA gene. 78 2e-32 4
Z75487|Z75487.1 L.mesenteroides rrn operon, 23S rRNA gene. 78 2e-32 4
BD107240|BD107240.1 Base sequence for detecting Lactobacillu... 78 2e-32 4
AB086179|AB086179.1 Anthoceros formosae chloroplast DNA, com... 56 2e-32 14
AY309483|AY309483.1 Unknown marine alpha proteobacterium JP5... 88 4e-32 5
U30821|U30821.1 Cyanophora paradoxa cyanelle, complete genome. 56 5e-32 11
AY217738|AY217738.1 Eimeria tenella chloroplast, complete ge... 62 7e-32 12
U35000|U35000.3 Bradyrhizobium elkanii 16S ribosomal RNA gen... 80 9e-32 4
U69638|U69638.3 Bradyrhizobium japonicum 16S ribosomal RNA g... 80 9e-32 4
AF396436|AF396436.1 Tetrahymena thermophila strain SB210 mit... 96 9e-32 7
AB076666|AB076666.1 Oryza sativa (japonica cultivar-group) m... 82 1e-31 6
AF184625|AF184625.1 Rhodopseudomonas palustris ribosomal RNA... 80 2e-31 4
AF184626|AF184626.1 Rhodopseudomonas palustris ribosomal RNA... 80 2e-31 4
Z35330|Z35330.1 B.japonicum (110) genes for 16S, 23S, 5S rib... 80 2e-31 4
AP000397|AP000397.1 Beta vulgaris subsp. vulgaris mitochondr... 82 4e-31 6
AY244367|AY244367.1 Azorhizobium caulinodans strain USDA 489... 80 8e-31 4
Y08501|Y08501.1 A.thaliana mitochondrial genome, part A. 82 1e-30 5
AY309492|AY309492.1 Roseobacter sp. KT0917 23S ribosomal RNA... 72 3e-30 4
AY309489|AY309489.1 Unknown marine alpha proteobacterium JP8... 72 3e-30 4
D61390|D61390.1 Dictyostelium mucoroides mitochondrial DNA f... 111 4e-30 2
AY267353|AY267353.1 Chara vulgaris mitochondrion, complete g... 82 4e-30 5
AJ344328|AJ344328.1 Laminaria digitata complete mitochondria... 78 5e-30 7
AP000396|AP000396.2 Beta vulgaris subsp. vulgaris mitochondr... 82 5e-30 5
X86563|X86563.2 Zea mays complete chloroplast genome. 56 8e-30 10
S60370|S60370.1 23S rRNA [Leuconostoc mesenteroides, Genomic... 72 1e-29 4
AY458631|AY458631.1 Uncultured bacterium 159 clone EBAC750-0... 94 2e-29 4
AX144790|AX144790.1 Sequence 3512 from Patent WO0134809. 78 2e-29 6
AF269470|AF269470.1 Staphylococcus epidermidis strain SR1 cl... 78 2e-29 6
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete ... 58 3e-29 20
AP006444|AP006444.1 Brassica napus mitochondrial DNA, comple... 82 4e-29 7
AF352393|AF352393.1 Candidatus Procabacter acanthamoebae 23S... 88 4e-29 5
AY309490|AY309490.1 Roseobacter sp. KT0202a 23S ribosomal RN... 72 4e-29 5
AY309488|AY309488.1 Unknown marine alpha proteobacterium JP7... 72 4e-29 5
AJ133711|AJ133711.1 Rickettsia australis 23S rRNA gene, part... 88 4e-29 5
BD107238|BD107238.1 Base sequence for detecting Lactobacillu... 78 5e-29 4
U11022|U11022.1 Rickettsia rickettsii 23S rRNA and 5S rRNA g... 88 6e-29 5
AX144936|AX144936.1 Sequence 3658 from Patent WO0134809. 78 9e-29 6
AF269616|AF269616.1 Staphylococcus epidermidis strain SR1 cl... 78 9e-29 6
AE008594|AE008594.1 Rickettsia conorii Malish 7, section 26 ... 88 1e-28 7
Y13122|Y13122.2 Rickettsia conorii fmt gene (partial) and 23... 88 2e-28 5
Y13124|Y13124.2 Rickettsia sibirica fmt gene (partial) and 2... 88 2e-28 5
Y13123|Y13123.2 Rickettsia parkeri fmt gene (partial) and 23... 88 2e-28 5
Y13125|Y13125.2 Rickettsia rickettsii fmt gene (partial) and... 88 2e-28 5
CK168395|CK168395.1 FGAS042888 Triticum aestivum FGAS: TaLt6... 82 2e-28 3
AE012982|AE012982.1 Thermoanaerobacter tengcongensis strain ... 86 2e-28 5
AE013169|AE013169.1 Thermoanaerobacter tengcongensis strain ... 86 3e-28 5
M68929|M68929.1 Marchantia polymorpha complete mitochondrial... 82 7e-28 7
X87287|X87287.1 P.denitrificans 23S rRNA gene. 72 7e-28 5
AF393599|AF393599.1 Klebsormidium subtilissimum large subuni... 105 7e-28 4
X68424|X68424.1 B.globisporus gene for 23S rRNA. 78 7e-28 4
X87286|X87286.1 N.exedens 23S rRNA gene. 80 7e-28 4
AE017211|AE017211.1 Geobacter sulfurreducens PCA, section 5 ... 88 1e-27 6
AE017209|AE017209.1 Geobacter sulfurreducens PCA, section 3 ... 88 1e-27 5
K00634|K00634.1 Paramecium primaurelia mt large subunit rRNA... 96 1e-27 5
AF041468|AF041468.1 Guillardia theta complete plastid genome. 62 1e-27 11
AF352392|AF352392.1 Candidatus Procabacter sp. UWC6 23S ribo... 88 2e-27 5
AF245364|AF245364.1 Planctomyces brasiliensis 23S ribosomal ... 90 2e-27 4
X68037|X68037.1 L.carnosum gene for 23S rRNA. 72 3e-27 4
>U21880|U21880.1 Dictyostelium discoideum mitochondrion large subunit
rRNA (rrn) gene, mitochondrial gene encoding
mitochondrial rRNA, partial sequence.
Length = 1628
Score = 634 bits (320), Expect(2) = 0.0
Identities = 320/320 (100%)
Strand = Plus / Plus
Query: 1 tacaaaattataacattggtagtaaaatgttccgtataattgtgaagttaactcaagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tacaaaattataacattggtagtaaaatgttccgtataattgtgaagttaactcaagaag 860
Query: 61 agataatggagttatcggaattaagaatgctgatatgagtaatgttaataaggttaagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 agataatggagttatcggaattaagaatgctgatatgagtaatgttaataaggttaagac 920
Query: 121 cttatcactgaaaattagaagtttcctaataaaaaggtaagctgattagggttacgcgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 cttatcactgaaaattagaagtttcctaataaaaaggtaagctgattagggttacgcgat 980
Query: 181 cgctaagattaatatgacaataaactatcgatgcgcatatagattaataattctaacgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 cgctaagattaatatgacaataaactatcgatgcgcatatagattaataattctaacgtt 1040
Query: 241 tttattgtagttttaattgacatgtgtattttaaataattatattatacttacattatag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 tttattgtagttttaattgacatgtgtattttaaataattatattatacttacattatag 1100
Query: 301 attatttgaaatataagttt 320
||||||||||||||||||||
Sbjct: 1101 attatttgaaatataagttt 1120
Score = 446 bits (225), Expect(2) = 0.0
Identities = 225/225 (100%)
Strand = Plus / Plus
Query: 372 tcgtacttaaaccgacactggttaattgatagaatatattaaagtgtagaatgaatgatt 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1172 tcgtacttaaaccgacactggttaattgatagaatatattaaagtgtagaatgaatgatt 1231
Query: 432 ctgaaggaactcggcaaaataactccgtaactgcgggagaaggagagcctttgttgtaaa 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1232 ctgaaggaactcggcaaaataactccgtaactgcgggagaaggagagcctttgttgtaaa 1291
Query: 492 aaatgaaggtcacagtaaagaaggggtggcgactgtttaataaaaacacaggattctgca 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1292 aaatgaaggtcacagtaaagaaggggtggcgactgtttaataaaaacacaggattctgca 1351
Query: 552 aaatggcaacatgatgtatagggtctgcgacctgcccggtgctcc 596
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1352 aaatggcaacatgatgtatagggtctgcgacctgcccggtgctcc 1396
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Hits to DB: 25,071,883
Number of Sequences: 31773783
Number of extensions: 25071883
Number of successful extensions: 2304959
Number of sequences better than 10.0: 23047
length of query: 977
length of database: U,072,735,791
effective HSP length: 22
effective length of query: 955
effective length of database: T,373,712,565
effective search space: 34736895499575
effective search space used: 34736895499575
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
[blastall] WARNING: [000.000] Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
Dictyostelium discoideum cDNA Project Home