Dictyostelium discoideum cDNA Clone CFA623

Sequence CFA623

GGAAAATAAT TNATATATGA TGATGATGGG TGGTGGTGGT ATTGGTAATA
TAAATAATAA TNAATTTTAT TCACCAATTA TTAGTACATC AGCACAATCA
TTTAATTCAA TAGTAGAATG GAAAAGAGAT ATTATAAGGC AATTGAATGA
TAGGAACCAA AATCAAACCA ACAATTACTC TGAATTCATG AGAATATATA
CAGATTTATT AAAGAGAGAA CGTACATTAA ACGATCGTAC ATTGTTATAT
GAAAAAGAGA TAGTTTCATT AAGAAACGAG AAAAAGACAC AACAACAACC
TCCATCAGGT TCCTCTAAAA TGGATTCGTC GTCGTCGTCG TCTTCATCGA
ATCGTGTTAG TGGTATGGGA TCAACGATTG AAGAAATGGA GCAAAAACTA
TTCAAACTTC AAGAAGATTT AACCAATAGT TATAAAAGAA ATGCTGATAA
TGCCTCTAGC ATTCTATTAT TAAATGATAA GAATAAAGAT TTACAAAATG
AATTAATGTC AAAAGAGATT GAAATCGAAA GAATTCGATC AACTATTCAA
CAAGATTTAG ATTCAATAAA AAGATTAGAA ATGGTTGTAA TTGAAAAAGA
AAATGTTTCA CAAATTATTA GAGATGAATT ATCATCATTA CAAACAGAAT
TTTTACATAA TGAAAGTAAA GTTGTA---- ------TTTC TCACCAAATG
ATGAATCGAT ATTGGGCACG AGTAATGATA ATTCAGCACG TCTTTGGAAT
ACGGAATTGG GTCGTTCAAG ACACACATTG ACTGGCCATA TTGGTAAGGT
GTATACGGGT AAATTCATAA ACTCGAATCG TGTGGTCACG GGCAGTCATG
ATCGTACTAT CAAATTGTGG GATCTTCAAA AGGGTTATTG TACACGTACC
ATCTTTTGTT TCTCAAGTTG TAATGATTTG GTGATCCTAG GTGGTAGTGG
CACTCATTTA GCTAGTGGTC ATGTCGATCA TAGTGTCAGA TTTTGGGATT
CAAACGCTGG TGAACCAACT CAAGTACTCT CATCGATTCA CGAGGGTCAA
ATCACTTCAA TCACAAATTC ACCCACAAAT ACCAATCAAA TCCTTACAAA
CTCTCGTGAT CATACCCTAA AGATCATCGA TATACGTACC TTTGATACAA
TTAGAACCTT TAAGGATCCA GAATATCGTA ATGGTCTAAA TTGGACTAAA
GCTTCTTGGT CTCCAGATGG TCGTTATATT GCATCAGGTT CAATCGATGG
TTCAATTTGT ATTTGGGATG CTACAAATGG TAAAACCGTT AAAGTTTTAA
CAAAAGTTCA TAATAATGGT TCTTCAGTTT GTTGTTGTTC TTGGTCACCA
TTAGCAAATA TTTTTATATC TGCNATAAAG ATAAAAATAN ATTCAANGGA
ANAAATTTTA CAAAGTTT

Translated Amino Acid Sequence CFA623

ENNXYMMMMGGGGIGNINNNXFYSPIISTSAQSFNSIVEWKRDIIRQLNDRNQNQTNNYS
EFMRIYTDLLKRERTLNDRTLLYEKEIVSLRNEKKTQQQPPSGSSKMDSSSSSSSSNRVS
GMGSTIEEMEQKLFKLQEDLTNSYKRNADNASSILLLNDKNKDLQNELMSKEIEIERIRS
TIQQDLDSIKRLEMVVIEKENVSQIIRDELSSLQTEFLHNESKVV---

---FSPNDESILGTSNDNSARLWNTELGRSRHTLTGHIGKVYTGKFINSNRVVTGSHDRT
IKLWDLQKGYCTRTIFCFSSCNDLVILGGSGTHLASGHVDHSVRFWDSNAGEPTQVLSSI
HEGQITSITNSPTNTNQILTNSRDHTLKIIDIRTFDTIRTFKDPEYRNGLNWTKASWSPD
GRYIASGSIDGSICIWDATNGKTVKVLTKVHNNGSSVCCCSWSPLANIFISAIKIKIXSX
EXILQS

Homology CFA623 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


CFA623 (CFA623Q) /CSM/CF/CFA6-A/CFA623Q.Seq.d/                       2050   0.0
SLA566 (SLA566Q) /CSM/SL/SLA5-C/SLA566Q.Seq.d/                        349   7e-95
VHM256 (VHM256Q) /CSM/VH/VHM2-C/VHM256Q.Seq.d/                         42   0.023
VHL165 (VHL165Q) /CSM/VH/VHL1-C/VHL165Q.Seq.d/                         42   0.023
VHJ886 (VHJ886Q) /CSM/VH/VHJ8-D/VHJ886Q.Seq.d/                         42   0.023
VHG305 (VHG305Q) /CSM/VH/VHG3-A/VHG305Q.Seq.d/                         42   0.023
SHL548 (SHL548Q) /CSM/SH/SHL5-B/SHL548Q.Seq.d/                         42   0.023
SHK270 (SHK270Q) /CSM/SH/SHK2-C/SHK270Q.Seq.d/                         42   0.023
SHE770 (SHE770Q) /CSM/SH/SHE7-C/SHE770Q.Seq.d/                         42   0.023
SHC258 (SHC258Q) /CSM/SH/SHC2-C/SHC258Q.Seq.d/                         42   0.023

Homology CFA623 vs DNA

Sequences producing significant alignments:                    (bits)  Value  N


AF019236|AF019236.1 Dictyostelium discoideum TipD (tipD) ge...  1362  0.0  5
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 m...    38  0.017  11
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 m...    34  0.040  11
AR271569|AR271569.1 Sequence 1 from patent US 6503729.            42  0.14  16
AC130555|AC130555.5 Rattus norvegicus clone CH230-4H10, WOR...    48  0.30  1
AC137151|AC137151.1 Mus musculus chromosome UNK clone RP24-...    48  0.30  1
BP121889|BP121889.1 Bombyx mori cDNA, clone:ceN-5530.             48  0.30  1
BP122484|BP122484.1 Bombyx mori cDNA, clone:ceN-6290.             48  0.30  1
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 m...    34  0.50  12
CF442511|CF442511.1 EST678856 normalized cDNA library of on...    38  0.64  2

Homology CFA623 vs Protein

Sequences producing significant alignments:                      (bits) Value


(O15736) RecName: Full=Protein tipD;  &AF019236_1(AF019236|pid:n...   408   e-112
AY398617_1(AY398617|pid:none) Homo sapiens APG16L beta mRNA, com...   154   9e-36
BC117337_1(BC117337|pid:none) Homo sapiens ATG16 autophagy relat...   154   9e-36
AC013726_3(AC013726|pid:none) Homo sapiens BAC clone RP11-400N9 ...   154   9e-36
(Q676U5) RecName: Full=Autophagy-related protein 16-1; AltName: ...   154   9e-36
BC071846_1(BC071846|pid:none) Homo sapiens ATG16 autophagy relat...   154   9e-36
AK123876_1(AK123876|pid:none) Homo sapiens cDNA FLJ41882 fis, cl...   154   9e-36
AK155358_1(AK155358|pid:none) Mus musculus NOD-derived CD11c +ve...   153   2e-35
BC049122_1(BC049122|pid:none) Mus musculus autophagy-related 16-...   153   2e-35
AB087880_1(AB087880|pid:none) Mus musculus mRNA for Apg16L beta,...   153   2e-35

Homology CFA623 vs Genome