Homology AHJ322 vs Protein
Query= AHJ322 (AHJ322Q) /CSM/AH/AHJ3-A/AHJ322Q.Seq.d/
(1444 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC116963_5(AC116963|pid:none) Dictyostelium discoideum chromosom... 400 e-109
CP002349_3199(CP002349|pid:none) Marivirga tractuosa DSM 4126, c... 74 3e-11
CU207366_2768(CU207366|pid:none) Gramella forsetii KT0803 comple... 72 8e-11
CP001619_5691(CP001619|pid:none) Dyadobacter fermentans DSM 1805... 70 2e-10
CP002434_295(CP002434|pid:none) Pantoea sp. At-9b plasmid pPAT9B... 67 3e-09
AM398681_1268(AM398681|pid:none) Flavobacterium psychrophilum JI... 67 3e-09
CP001673_2198(CP001673|pid:none) Flavobacteriaceae bacterium 351... 66 4e-09
CP002455_1942(CP002455|pid:none) Weeksella virosa DSM 16922, com... 66 6e-09
CP000685_363(CP000685|pid:none) Flavobacterium johnsoniae UW101,... 65 8e-09
CP002113_1339(CP002113|pid:none) Capnocytophaga canimorsus Cc5, ... 64 3e-08
CP002157_728(CP002157|pid:none) Maribacter sp. HTCC2170, complet... 63 4e-08
AE009951_824(AE009951|pid:none) Fusobacterium nucleatum subsp. n... 63 5e-08
CP000675_3000(CP000675|pid:none) Legionella pneumophila str. Cor... 62 1e-07
CP002528_472(CP002528|pid:none) Krokinobacter sp. 4H-3-7-5, comp... 61 1e-07
AC116920_13(AC116920|pid:none) Dictyostelium discoideum chromoso... 61 2e-07
FP476056_2512(FP476056|pid:none) Zobellia galactanivorans strain... 59 9e-07
CP002999_646(CP002999|pid:none) Muricauda ruestringensis DSM 132... 58 2e-06
GU567965_24(GU567965|pid:none) Uncultured gamma proteobacterium ... 58 2e-06
CP002534_2164(CP002534|pid:none) Cellulophaga lytica DSM 7489, c... 57 2e-06
AE015924_1094(AE015924|pid:none) Porphyromonas gingivalis W83, c... 57 2e-06
AP012203_2173(AP012203|pid:none) Porphyromonas gingivalis TDC60 ... 57 2e-06
CP002453_570(CP002453|pid:none) Cellulophaga algicola DSM 14237,... 57 3e-06
AP009380_1402(AP009380|pid:none) Porphyromonas gingivalis ATCC 3... 57 4e-06
CR628337_2755(CR628337|pid:none) Legionella pneumophila str. Len... 56 5e-06
CP002691_4771(CP002691|pid:none) Haliscomenobacter hydrossis DSM... 55 1e-05
CP002535_1457(CP002535|pid:none) Acidianus hospitalis W1, comple... 54 3e-05
CP000626_243(CP000626|pid:none) Vibrio cholerae O395 chromosome ... 53 5e-05
CP001486_342(CP001486|pid:none) Vibrio cholerae MJ-1236 chromoso... 51 1e-04
CP001686_263(CP001686|pid:none) Kytococcus sedentarius DSM 20547... 51 2e-04
AL445066_58(AL445066|pid:none) Thermoplasma acidophilum complete... 49 6e-04
CP000792_1115(CP000792|pid:none) Campylobacter concisus 13826, c... 48 0.001
CP000076_2988(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 47 0.004
CP000509_1983(CP000509|pid:none) Nocardioides sp. JS614, complet... 45 0.011
AE006641_1036(AE006641|pid:none) Sulfolobus solfataricus P2, com... 45 0.014
CP002426_1023(CP002426|pid:none) Sulfolobus islandicus HVE10/4, ... 44 0.018
CP001154_429(CP001154|pid:none) Laribacter hongkongensis HLHK9, ... 43 0.052
CT573326_1702(CT573326|pid:none) Pseudomonas entomophila str. L4... 42 0.089
BA000023_2608(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 41 0.20
CP001026_381(CP001026|pid:none) Burkholderia ambifaria MC40-6 ch... 41 0.20
CR954247_529(CR954247|pid:none) Pseudoalteromonas haloplanktis s... 40 0.26
BA000011_476(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,... 39 0.75
EF614226_1(EF614226|pid:none) Plasmodium falciparum isolate Indo... 37 2.2
(Q5AM84) RecName: Full=U1 small nuclear ribonucleoprotein compon... 36 4.9
CP001056_2011(CP001056|pid:none) Clostridium botulinum B str. Ek... 36 4.9
CR855484_1(CR855484|pid:none) Xenopus tropicalis finished cDNA, ... 36 4.9
BC158351_1(BC158351|pid:none) Xenopus tropicalis hypothetical pr... 36 4.9
BX548174_1269(BX548174|pid:none) Prochlorococcus marinus MED4 co... 36 4.9
CP000246_539(CP000246|pid:none) Clostridium perfringens ATCC 131... 36 4.9
CP000562_245(CP000562|pid:none) Methanoculleus marisnigri JR1, c... 36 6.4
CP002352_2017(CP002352|pid:none) Bacteroides helcogenes P 36-108... 35 8.3
AE000512_298(AE000512|pid:none) Thermotoga maritima MSB8, comple... 35 8.3
CP001047_207(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 35 8.4
>AC116963_5(AC116963|pid:none) Dictyostelium discoideum chromosome 2
map 4657875-4914984 strain AX4, complete sequence.
Length = 802
Score = 400 bits (1028), Expect = e-109
Identities = 203/214 (94%), Positives = 203/214 (94%)
Frame = +2
Query: 665 LPKYTRVLDFTPCEQGKLEYNETTIEQFIKDXXXXXXXXXXXINGDDGYFIDFSEIVLDR 844
LPKYTRVLDFTPCEQGKLEYNETTIEQFIKD INGDDGYFIDFSEIVLDR
Sbjct: 589 LPKYTRVLDFTPCEQGKLEYNETTIEQFIKDSSSLDESSSPSINGDDGYFIDFSEIVLDR 648
Query: 845 EHRLAYCSTKNDRQSKFIDLWASALGYKVIKINSKEAANKFIFIGSKFALFCPNALSSKE 1024
EHRLAYCSTKNDRQSKFIDLWASALGYKVIKINSKEAANKFIFIGSKFALFCPNALSSKE
Sbjct: 649 EHRLAYCSTKNDRQSKFIDLWASALGYKVIKINSKEAANKFIFIGSKFALFCPNALSSKE 708
Query: 1025 QSEEVIQALQTTSAKKVIEITEEQMNNSCAKIIQVKGNQKTHLLMSDKVMNSFTSNQLTE 1204
QSEEVIQALQTTSAKKVIEITEEQMNNSCAKIIQVKGNQKTHLLMSDKVMNSFTSNQLTE
Sbjct: 709 QSEEVIQALQTTSAKKVIEITEEQMNNSCAKIIQVKGNQKTHLLMSDKVMNSFTSNQLTE 768
Query: 1205 LKSYVDQLLHADMSNLENMGAHNDGMISMLGRLV 1306
LKSYVDQLLHADMSNLENMGAHNDGMISMLGRLV
Sbjct: 769 LKSYVDQLLHADMSNLENMGAHNDGMISMLGRLV 802
Score = 399 bits (1026), Expect = e-109
Identities = 199/203 (98%), Positives = 199/203 (98%)
Frame = +3
Query: 63 MKQSISNYQLANMASPFPTKGPLYNLSGKYKDLSFNQVHENDEARIVILNEPSLPQWMGS 242
MKQSISNYQLANMASPFPTKGPLYNLSGKYKDLSFNQVHENDEARIVILNEPSLPQWMGS
Sbjct: 1 MKQSISNYQLANMASPFPTKGPLYNLSGKYKDLSFNQVHENDEARIVILNEPSLPQWMGS 60
Query: 243 IHPNGSLYEEPLDLSKAKEEHKLFRELLEKEGCTVFTVREILTGSYDQTKSEDIQHRVKL 422
IHPNGSLYEEPLDLSKAKEEHKLFRELLEKEGCTVFTVREILTGSYDQTKSEDIQHRVKL
Sbjct: 61 IHPNGSLYEEPLDLSKAKEEHKLFRELLEKEGCTVFTVREILTGSYDQTKSEDIQHRVKL 120
Query: 423 EDFAFNSMHYELDSQQNVQELSTEDKLLISDQYKKKCIECMSNEQLVEVILTRPTIRLRK 602
EDFAFNSMHYELDSQQNVQELSTEDKLLISDQYKKKCIECMSNEQLVEVILTRPTIRLRK
Sbjct: 121 EDFAFNSMHYELDSQQNVQELSTEDKLLISDQYKKKCIECMSNEQLVEVILTRPTIRLRK 180
Query: 603 SERDTELLSTEYSFKPLXXXXFQ 671
SERDTELLSTEYSFKPL FQ
Sbjct: 181 SERDTELLSTEYSFKPLVNLIFQ 203
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 2,975,662,950
Number of extensions: 51760171
Number of successful extensions: 128380
Number of sequences better than 10.0: 52
Number of HSP's gapped: 128313
Number of HSP's successfully gapped: 53
Length of query: 481
Length of database: 1,732,582,204
Length adjustment: 136
Effective length of query: 345
Effective length of database: 1,005,089,236
Effective search space: 346755786420
Effective search space used: 346755786420
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Dictyostelium discoideum cDNA Project Home