Dictyostelium discoideum cDNA Clone AFO160

Sequence AFO160

CTGTTGGCCT ACTGGCAGAC AATTCACAAC TACAATTTAG TTTATCTAGT
AGTAGNGGAA TTAAAGATAA CCATAATGTT CCAACTATTG ATTTAAATAC
AATNAGTAGT AATAATAATC AACAAATTAA CTTACCAAGT GGATTTTTAT
CACCAAAAGT AG-------- --ATCCGCTC AACAACCCAC CAAATGAACC
AGTTAATCCA TTATTGAATA AATTAAAAGG TCCAAATAGA AGATCATCAA
TGGCAACCTT ACAAATGAAA CCATCTGGTA TCTCTGAAGC TAGAAGATCT
TCAATCTCTG TTCCATTTGA ATTAAATCGT AGAGGTTCAT TATCTGGTGA
TATTCCTTCT TATTGTCCAC CTGCTCCAAA ATTAAAATCA ACTCCAACTC
TTAAATCAAC TCCTGCTATC GTTCAAAATG GTGGTTCAAT TACTTCAACT
TCATCATCAT CATCATCATC ATCATCATCA TCATCGTCAA CAACTAAAAA
TATTCATCCA ACTTCTGAAT CAAAGAAACA ACCAATTGCT AAAAAACATA
AACCAGATTT AGATAGTTTC AAAGATGTTT TAATTAGTTC ACTTCAAGAT
GATTTTGCAT TGAAAATGTT TGTCAAAAAG AGAAGTTTAA CAACATATAT
GGAATTATTA AAAGATTTAT ATAGAGAATT TATTATCGAA ATCCCATTAT
TACTAAAGTG TATTTCATTG GTACATAATG GTTTATATGA ACTAACTGAT
GAAGAATGTA CAATGTTATT TGATTTAGAA GAGATGGCAC AAGAACAACA
AAACTTGGAA AAACAAAATG ATCAACAACA AAATCTTCTT ACTCAAAATA
ATCAAATATT CCAATGGAAA ACAAATACTT GGGAAGAAAA ACCTCAAACT
CCACCACCAC CTCCAACTTC ATACTTNATT TAGGG

Translated Amino Acid Sequence AFO160

VGLLADNSQLQFSLSSSXGIKDNHNVPTIDLNTXSSNNNQQINLPSGFLSPKV---

---PLNNPPNEPVNPLLNKLKGPNRRSSMATLQMKPSGISEARRSSISVPFELNRRGSLS
GDIPSYCPPAPKLKSTPTLKSTPAIVQNGGSITSTSSSSSSSSSSSSSTTKNIHPTSESK
KQPIAKKHKPDLDSFKDVLISSLQDDFALKMFVKKRSLTTYMELLKDLYREFIIEIPLLL
KCISLVHNGLYELTDEECTMLFDLEEMAQEQQNLEKQNDQQQNLLTQNNQIFQWKTNTWE
EKPQTPPPPPTSYXI*

Homology AFO160 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


AFO160 (AFO160Q) /CSM/AF/AFO1-C/AFO160Q.Seq.d/                        886   0.0
SSH178 (SSH178Q) /CSM/SS/SSH1-D/SSH178Q.Seq.d/                        860   0.0
CFJ856 (CFJ856Q) /CSM/CF/CFJ8-C/CFJ856Q.Seq.d/                        858   0.0
AFG503 (AFG503Q) /CSM/AF/AFG5-A/AFG503Q.Seq.d/                        854   0.0
SHE164 (SHE164Q) /CSM/SH/SHE1-C/SHE164Q.Seq.d/                        599   e-170
SSM585 (SSM585Q) /CSM/SS/SSM5-D/SSM585Q.Seq.d/                        587   e-166
SSE439 (SSE439Q) /CSM/SS/SSE4-B/SSE439Q.Seq.d/                        569   e-161
CHN426 (CHN426Q) /CSM/CH/CHN4-B/CHN426Q.Seq.d/                        507   e-143
CHI590 (CHI590Q) /CSM/CH/CHI5-D/CHI590Q.Seq.d/                        379   e-104
VHE257 (VHE257Q) /CSM/VH/VHE2-C/VHE257Q.Seq.d/                         40   0.060

Homology AFO160 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(U63062) Dictyostelium discoideum YELA (yelA) mRNA, complete...   601   0.0    3
(BJ345942) Dictyostelium discoideum cDNA clone:dda29g15, 3' ...   601   0.0    2
(BJ375978) Dictyostelium discoideum cDNA clone:ddc20p14, 3' ...   601   0.0    3
(BJ405720) Dictyostelium discoideum cDNA clone:dds32o15, 3' ...   599   0.0    2
(BJ342448) Dictyostelium discoideum cDNA clone:dda14e01, 3' ...   601   0.0    4
(BJ384104) Dictyostelium discoideum cDNA clone:ddc48d08, 3' ...   507   0.0    2
(AU038030) Dictyostelium discoideum slug cDNA, clone SSH178.      583   0.0    2
(AU072411) Dictyostelium discoideum slug cDNA, clone SSE439.      476   e-129  1
(BJ362197) Dictyostelium discoideum cDNA clone:ddc20p14, 5' ...   446   e-123  2
(C93127) Dictyostelium discoideum slug cDNA, clone SSM585.        321   e-116  2

Homology AFO160 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q0C0T6) RecName: Full=30S ribosomal protein S4;  &CP000158_1923...    35   4.5
FJ607020_2(FJ607020|pid:none) Lymphocytic choriomeningitis virus...    35   7.6
EF026032_1(EF026032|pid:none) Lilium longiflorum clone LLP-69 pu...    34   10.0

Homology AFO160 vs Genome