Dictyostelium discoideum cDNA Clone AFN501

Sequence AFN501

ATTTTTTTTA TCGCCTCACT TTTTATTTTT GTATTATATT CTCTCTTTAT
TTCTTTTCTA TATATAGATA AATTTTTTTT AGAAAAACTA AAAAAAAAAC
CTCAAACAAT TAATACAAAA TGGTAAACAT TGGTGGAACT CAAGAAAAAT
GTACTGCATG TGCTAAAACT GTATACTTAA CAGAAAAGAT TGTAGTTGAA
GATAAAGAAG ATAAGAAAAC TTTCCACAAA TTATGTTTAA AATGTACTCA
CTGTAAGCTT ACATTAAGTC TTGGTAACTA TGCATCATTA AATGGTGTAT
TCTATTGTAA ACCACATTTC AAACAATTAT TCGCCACCAA AGGTAACTAC
GATGAAGGTT TCGGTAAATC AAAACATTCT GAAAAATGGA CACCACAAGC
CACCCCAACT GGTACTTCTT CATTCATTCC AGTTGAAGAA TCAAAATCAT
CAGAAAAGAA AGAAACACCA ACAACAATTT CATCAAAATT CTCAGGATCA
ACTGAAAAAT GTAATCTCTG TAATAAGACA GTATATTTAA CAGAAAAGAT
TGTTGTTGAA GATAAAGAAG ATAAGAAAGT NTTACATAAA CAATGTTTGA
AATGTACACA TTGTAGNGTT GTATTAAATC TTGGTACCTA TGCATCAATG
AAAGGTGTAT TCTATTGTAA ACCACATTTC AAACAATTAT TCGCCCCCAA
AGGTAACTAT GATGAAGGTT TTGGTAA--- -------TGC CAAGAAATTC
TCAACTGGTA GTTCAGAGAA ATGTCACGAT TGTCAAAAAT CAGTTTACCT
CACAGAGAAA GTCGTACTTG AGGAATTGGA AAACAAGAGA ATCTTCCACA
AGGCTTGTTT GAAATGTAGT AAATGTTCAG TCATTCTCAC CTTGGGTACT
TTGGTTCAAT TGGATGGTGT TATCTATTGT AAACCACACT TTAAAGAACT
CTATGCCACT CAAGGTAATT TAGATGGTGG TTTCGGTAAA CCAAAACACT
CTGAAAAATG GGAAAATAAC CCATTCCCAT ATTTAGAAAA GGATAGCAGT
TATGTACCAT CCGTTGAAAA GGTTGAATCT CAAATGAATA ATGCTTCATC
TGAATCTGAT GTTGATAGAT TTAAAAATAT TAACAATGAT GATTCTGATA
AACCAAGAAG ACAACAACAA CCAGTTTCTC AACCAGAAGA AGAACAACAA
CAACAAGAAG AAGAAAAAGT TGAAGAACCA ATCTCTGAAG AAGAAGAAAA
AGTTGAAGAA AAAGTTGAAG AACCAGTCGC TGAACAAGAA GAAGAAAAGG
TTGAGGAACC AGTTGTTGCT GAAGAAGAAA AAGTTGAAGA ACCAGTTACT
GAAGAAGAAA AAGTTGAAGA ACCAGTCGTT GCCTCTGAAG AACCAGTGAA
GAAGAAACAA AAGCGAAGAA GAAAACTAAA CTTAAATTTC TCAACGCAAA

Translated Amino Acid Sequence AFN501

ffyrltfyfciifslyffsiyr*iffrktkkktsnn*YKMVNIGGTQEKCTACAKTVYLT
EKIVVEDKEDKKTFHKLCLKCTHCKLTLSLGNYASLNGVFYCKPHFKQLFATKGNYDEGF
GKSKHSEKWTPQATPTGTSSFIPVEESKSSEKKETPTTISSKFSGSTEKCNLCNKTVYLT
EKIVVEDKEDKKVLHKQCLKCTHCXVVLNLGTYASMKGVFYCKPHFKQLFAPKGNYDEGF
G---

---AKKFSTGSSEKCHDCQKSVYLTEKVVLEELENKRIFHKACLKCSKCSVILTLGTLVQ
LDGVIYCKPHFKELYATQGNLDGGFGKPKHSEKWENNPFPYLEKDSSYVPSVEKVESQMN
NASSESDVDRFKNINNDDSDKPRRQQQPVSQPEEEQQQQEEEKVEEPISEEEEKVEEKVE
EPVAEQEEEKVEEPVVAEEEKVEEPVTEEEKVEEPVVASEEPVKKKQKRRRKLNLNFSTQ

Homology AFN501 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


AFN501 (AFN501Q) /CSM/AF/AFN5-A/AFN501Q.Seq.d/                       2016   0.0
AFG661 (AFG661Q) /CSM/AF/AFG6-C/AFG661Q.Seq.d/                       1219   0.0
AFG415 (AFG415Q) /CSM/AF/AFG4-A/AFG415Q.Seq.d/                       1215   0.0
AFN295 (AFN295Q) /CSM/AF/AFN2-D/AFN295Q.Seq.d/                       1205   0.0
AFG789 (AFG789Q) /CSM/AF/AFG7-D/AFG789Q.Seq.d/                       1205   0.0
AFF609 (AFF609Q) /CSM/AF/AFF6-A/AFF609Q.Seq.d/                       1205   0.0
AFE756 (AFE756Q) /CSM/AF/AFE7-C/AFE756Q.Seq.d/                       1205   0.0
SFF706 (SFF706Q) /CSM/SF/SFF7-A/SFF706Q.Seq.d/                       1203   0.0
CHA595 (CHA595Q) /CSM/CH/CHA5-D/CHA595Q.Seq.d/                       1203   0.0
AFL234 (AFL234Q) /CSM/AF/AFL2-B/AFL234Q.Seq.d/                       1203   0.0

Homology AFN501 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


BE858201|BE858201.1 7g19d02.x1 NCI_CGAP_Brn23 Homo sapiens c...    52   0.026  1
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   0.052  25
AC125155|AC125155.4 Mus musculus BAC clone RP24-380D9 from c...    42   0.057  9
BI504534|BI504534.1 BB170004B20D05.5 Bee Brain Normalized/Su...    38   0.078  2
AC124317|AC124317.1 Homo sapiens chromosome 17 clone CTD-205...    36   0.12   6
CR352295|CR352295.2 Zebrafish DNA sequence *** SEQUENCING IN...    38   0.14   10
AC124155|AC124155.2 Danio rerio clone CH211-46C3 strain Tue,...    36   0.17   9
AC093893|AC093893.2 Homo sapiens BAC clone RP11-707F2 from 4...    34   0.18   10
AZ078211|AZ078211.1 RPCI-23-452J23.TJ RPCI-23 Mus musculus g...    40   0.21   3
AL445249|AL445249.4 Human DNA sequence from clone RP11-123H2...    36   0.22   5

Homology AFN501 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC004665_22(AC004665|pid:none) Arabidopsis thaliana chromosome 2...   112   6e-26
EU496813_1(EU496813|pid:none) Nicotiana tabacum LIM domain prote...   109   6e-26
AF116851_1(AF116851|pid:none) Nicotiana tabacum LIM domain prote...   107   6e-26
EF148212_1(EF148212|pid:none) Populus trichocarpa clone WS0128_M...   112   8e-26
AK317129_1(AK317129|pid:none) Arabidopsis thaliana AT3G55770 mRN...   110   1e-25
AC135208_4(AC135208|pid:none) Oryza sativa (japonica cultivar-gr...   114   2e-25
BT061506_1(BT061506|pid:none) Zea mays full-length cDNA clone ZM...   106   2e-25
AF184886_1(AF184886|pid:none) Nicotiana tabacum LIM domain prote...   116   3e-25
GQ901953_1(GQ901953|pid:none) Hevea brasiliensis LIM1 mRNA, comp...   114   4e-25
EF146377_1(EF146377|pid:none) Populus trichocarpa clone WS0117_L...   114   4e-25

Homology AFN501 vs Genome