Dictyostelium discoideum cDNA Clone AFN309

Sequence AFN309

ATCTGTGTGT TTATTATTAA AAGTCAATCA ATCACATCAA ATAATATATA
AAACTATGGA AGATATGCAA GTTGAAAAGA ATACAGAAGG ATCATCATCA
TCATCATCAA ATAATAATAA TAATAATTCA ATTTCAAATG AATTCGATTT
AGAAACTTAT ATCAATAATT ATTCAGGATT TACAAAGATT CATAGATTAA
TTTTCATTGC TGATAATTGT AAACAATTAG AAGTTGAAGC ATATAATATG
GCATTGAAAG AAGTGCAAAA AACACCAAAT CTTGAACTCT ACAATACAAT
CATCAATAAA TCACACGGTA TTCTCGAACT TGACCCAGTA TACATTGAAA
ATTTAAGTAA AAAGAATTCC TTACAATTAG ATAAATTAGA ACAAGATTTA
AATACTGCTA AATCAAATAT GGTAAAAGAT AGTATTCGTT TTGCACAAAA
TGATTTAGGT GAATTTTATT ATAAAATTGG GGATCATCAA AATGCATTAA
AATGTTTTAT TAGAACTAGA GATTATTGTA CAACATCAAA ACATGTTTTA
GCAATGTGTT TTAATATTAT TAAATTAGGT GTAGATACTC AAAACTATAC
TCATGCACCA TCATACATTG CAAAAGCTGA ACAAA----- -----CTTTA
CAATTTAGAT GGTTCTCGTT ATAAATTAGC AGCTAGAAAA TTCATTGAAA
CTCCTTTTGA ACAATCAAAT GTATTTTCAG ATATAATTTC ACCACAAGAT
ATTGCATATT ATGGTGGATT ATGTGCATTG GCAACATTTG ATAGAAATGA
ATTAAAGAAG AAAGTGATTG ATGATCCAAT GTTTAAAAAC TATTTAGAAT
TAGTACCAGA ACTTAGGGAA TTAATTAACG ATTTCTATAA TACCAAGTAT
GGTTCATGTT TAAAGTATCT CGATAAAATG AAGCCAATTT TATTATTGGA
TATTCATCTC TATAAACATG TGGAGATTTT ATATCAAAGA ATTAGAAGCA
AAGCATTGGT TCAATACTTT TCACCATACC AATCGGTCGA TATGAATATT
ATGGCCAGTG CTTTCAATAC CACTGTCACT CTTTTGGAAA AGGAGATCAG
TAAACTCATT ATGGAAAATG AGATCCAAGC TCGTATCGAT TCTCATAATA
AACGTCTATA CGCTAGAAAA GCCGATCAAA GAACAACCAC CTTTGAAAAA
ACCGTTCAAG TTGGTTCCGA TTTCCAAAAC TCTTCAAATT CTCTCCTCTT
ACGTTTAGAG ATGTTAAATA ATAATATCTC AACCGTTTCA AATCGTAAAG
ATAATGAAAG AGGTAATTGG GAAAATCCAC ATCATCATCA CCAAATGCAA
CATCAAATGT TGGTTATTTA ATAATAATAA TAAATTTTAA

Translated Amino Acid Sequence AFN309

SVCLLLKVNQSHQIIYKTMEDMQVEKNTEGSSSSSSNNNNNNSISNEFDLETYINNYSGF
TKIHRLIFIADNCKQLEVEAYNMALKEVQKTPNLELYNTIINKSHGILELDPVYIENLSK
KNSLQLDKLEQDLNTAKSNMVKDSIRFAQNDLGEFYYKIGDHQNALKCFIRTRDYCTTSK
HVLAMCFNIIKLGVDTQNYTHAPSYIAKAEQ---

---LYNLDGSRYKLAARKFIETPFEQSNVFSDIISPQDIAYYGGLCALATFDRNELKKKV
IDDPMFKNYLELVPELRELINDFYNTKYGSCLKYLDKMKPILLLDIHLYKHVEILYQRIR
SKALVQYFSPYQSVDMNIMASAFNTTVTLLEKEISKLIMENEIQARIDSHNKRLYARKAD
QRTTTFEKTVQVGSDFQNSSNSLLLRLEMLNNNISTVSNRKDNERGNWENPHHHHQMQHQ
MLVI*****il

Homology AFN309 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


AFN309 (AFN309Q) /CSM/AF/AFN3-A/AFN309Q.Seq.d/                       2444   0.0
AFO845 (AFO845Q) /CSM/AF/AFO8-B/AFO845Q.Seq.d/                       1402   0.0
AFG409 (AFG409Q) /CSM/AF/AFG4-A/AFG409Q.Seq.d/                       1372   0.0
AFJ388 (AFJ388Q) /CSM/AF/AFJ3-D/AFJ388Q.Seq.d/                       1324   0.0
AFD533 (AFD533Q) /CSM/AF/AFD5-B/AFD533Q.Seq.d/                       1273   0.0
AFJ190 (AFJ190Q) /CSM/AF/AFJ1-D/AFJ190Q.Seq.d/                       1229   0.0
AFH239 (AFH239Q) /CSM/AF/AFH2-B/AFH239Q.Seq.d/                       1172   0.0
VFL450 (VFL450Q) /CSM/VF/VFL4-C/VFL450Q.Seq.d/                       1122   0.0
VSF853 (VSF853Q) /CSM/VS/VSF8-C/VSF853Q.Seq.d/                       1114   0.0
VFC358 (VFC358Q) /CSM/VF/VFC3-C/VFC358Q.Seq.d/                       1065   0.0

Homology AFN309 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ347401) Dictyostelium discoideum cDNA clone:dda27b03, 3' ...  1477   0.0    1
(DQ309429) Dictyostelium discoideum COP9 signalosome complex...  1419   0.0    2
(BJ342229) Dictyostelium discoideum cDNA clone:dda13b04, 3' ...  1372   0.0    1
(BJ346259) Dictyostelium discoideum cDNA clone:dda30j12, 3' ...  1306   0.0    2
(BJ344630) Dictyostelium discoideum cDNA clone:dda19p21, 3' ...  1249   0.0    2
(BJ344566) Dictyostelium discoideum cDNA clone:dda19c23, 3' ...  1229   0.0    1
(BJ341802) Dictyostelium discoideum cDNA clone:dda8a09, 3' e...  1181   0.0    2
(AU265896) Dictyostelium discoideum vegetative cDNA clone:VS...  1092   0.0    3
(BJ433976) Dictyostelium discoideum cDNA clone:ddv23d14, 3' ...  1090   0.0    2
(BJ342923) Dictyostelium discoideum cDNA clone:dda15m10, 3' ...  1021   0.0    3

Homology AFN309 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54QX3) RecName: Full=COP9 signalosome complex subunit 1;      ...   455   0.0
FB781974_1(FB781974|pid:none) Sequence 1247 from Patent WO200803...   265   e-105
BT123801_1(BT123801|pid:none) Picea sitchensis clone WS04717_H18...   261   e-105
EU964381_1(EU964381|pid:none) Zea mays clone 278453 COP9 signalo...   263   e-105
AM461944_1(AM461944|pid:none) Vitis vinifera contig VV78X085418....   247   e-104
FN393041_1(FN393041|pid:none) Carica papaya mRNA for Cop11 prote...   246   e-102
AF106844_1(AF106844|pid:none) Oryza sativa rCOP11 protein (rCOP1...   258   e-101
BT052344_1(BT052344|pid:none) Medicago truncatula clone MTYFD_FE...   253   e-100
AK117532_1(AK117532|pid:none) Arabidopsis thaliana At3g61140 mRN...   252   2e-98
BX897685_6(BX897685|pid:none) Zebrafish DNA sequence from clone ...   231   3e-98

Homology AFN309 vs Genome