Homology AFK594 vs Protein

Query= AFK594 (AFK594Q) /CSM/AF/AFK5-D/AFK594Q.Seq.d/
         (155 letters)

Database: nrp_B
           5,349,213 sequences; 1,732,582,204 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UB5) RecName: Full=26S proteasome non-ATPase regulatory subu...    87   2e-16
FN392321_1098(FN392321|pid:none) Pichia pastoris GS115 chromosom...    40   0.055
EU752646_1(EU752646|pid:none) Populus tremula isolate swl28-31 N...    36   0.80
EF146969_1(EF146969|pid:none) Populus trichocarpa clone WS01225_...    36   0.80
AM424416_1(AM424416|pid:none) Vitis vinifera contig VV78X196128....    36   0.80
FR824104_29(FR824104|pid:none) Albugo laibachii Nc14, genomic co...    35   1.0
AE013599_2169(AE013599|pid:none) Drosophila melanogaster chromos...    35   1.8
EU752639_1(EU752639|pid:none) Populus tremula isolate swl28-3 NA...    35   1.8
AY230837_1(AY230837|pid:none) Arabidopsis thaliana 26S proteasom...    33   4.0
EZ422378_1(EZ422378|pid:none) TSA: Glossina morsitans morsitans ...    33   4.0
FQ311471_196(FQ311471|pid:none) Sporisorium reilianum SRZ2 chrom...    33   4.0
AY230834_1(AY230834|pid:none) Arabidopsis thaliana 26S proteasom...    33   4.0
A86414(A86414) hypothetical protein F28N24.15 - Arabidopsis thal...    33   4.0
BT099214_1(BT099214|pid:none) Soybean clone JCVI-FLGm-26J12 unkn...    33   5.2
BT077675_1(BT077675|pid:none) Lepeophtheirus salmonis Pacific fo...    33   5.2
CP003014_542(CP003014|pid:none) Thielavia terrestris NRRL 8126 c...    32   8.8

>(Q54UB5) RecName: Full=26S proteasome non-ATPase regulatory subunit
           11; AltName: Full=26S proteasome regulatory subunit
           RPN6; AltName: Full=26S proteasome regulatory subunit
           S9;
          Length = 413

 Score = 87.4 bits (215), Expect = 2e-16
 Identities = 43/47 (91%), Positives = 43/47 (91%)
 Frame = +2

Query: 14  TDDVHALVNGKIGXKYHINRSIEAITQISKSHAKRSLHMFQXVTKXF 154
           TDDVHALVNGKIG KYH NRSIEAITQISKSHAKRSLHMFQ VTK F
Sbjct: 254 TDDVHALVNGKIGLKYHNNRSIEAITQISKSHAKRSLHMFQEVTKEF 300

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 326,336,676
Number of extensions: 5068772
Number of successful extensions: 5406
Number of sequences better than 10.0: 16
Number of HSP's gapped: 5405
Number of HSP's successfully gapped: 16
Length of query: 51
Length of database: 1,732,582,204
Length adjustment: 24
Effective length of query: 27
Effective length of database: 1,604,201,092
Effective search space: 43313429484
Effective search space used: 43313429484
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 25 (14.2 bits)




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