Homology AFK594 vs DNA
Query= AFK594 (AFK594Q) /CSM/AF/AFK5-D/AFK594Q.Seq.d/
(155 letters)
Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum22.seq; ddbjhum23.seq;
ddbjhum24.seq; ddbjhum3.seq; ddbjhum4.seq; ddbjhum5.seq; ddbjhum6.seq;
ddbjhum7.seq; ddbjhum8.seq; ddbjhum9.seq;
/db/DDBJNEW.DATA/b/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/b/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod10.seq;
ddbjrod2.seq; ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq;
ddbjrod7.seq; ddbjrod8.seq; ddbjrod9.seq;
/db/DDBJNEW.DATA/b/new_ddbjrod.seq; ddbjmam.seq;
/db/DDBJNEW.DATA/b/new_ddbjmam.seq; ddbjvrt1.seq; ddbjvrt2.seq;
ddbjvrt3.seq; ddbjvrt4.seq; ddbjvrt5.seq;
/db/DDBJNEW.DATA/b/new_ddbjvrt.seq; ddbjinv1.seq; ddbjinv2.seq;
ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq; ddbjinv6.seq;
/db/DDBJNEW.DATA/b/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln10.seq;
ddbjpln2.seq; ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq; ddbjpln6.seq;
ddbjpln7.seq; ddbjpln8.seq; ddbjpln9.seq;
/db/DDBJNEW.DATA/b/new_ddbjpln.seq; ddbjbct1.seq; ddbjbct2.seq;
ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq; ddbjbct7.seq;
ddbjbct8.seq; /db/DDBJNEW.DATA/b/new_ddbjbct.seq; ddbjvrl1.seq;
ddbjvrl2.seq; ddbjvrl3.seq; /db/DDBJNEW.DATA/b/new_ddbjvrl.seq;
ddbjphg.seq; /db/DDBJNEW.DATA/b/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/b/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq;
ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq;
ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq;
ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq;
ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq;
ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq;
ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq;
ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq; ddbjgss4.seq;
ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq;
ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq;
ddbjgss48.seq; ddbjgss49.seq; ddbjgss5.seq; ddbjgss50.seq;
ddbjgss51.seq; ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq;
ddbjgss55.seq; ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq;
ddbjgss59.seq; ddbjgss6.seq; ddbjgss60.seq; ddbjgss61.seq;
ddbjgss62.seq; ddbjgss63.seq; ddbjgss64.seq; ddbjgss65.seq;
ddbjgss66.seq; ddbjgss67.seq; ddbjgss68.seq; ddbjgss69.seq;
ddbjgss7.seq; ddbjgss70.seq; ddbjgss71.seq; ddbjgss72.seq;
ddbjgss73.seq; ddbjgss74.seq; ddbjgss75.seq; ddbjgss76.seq;
ddbjgss77.seq; ddbjgss78.seq; ddbjgss79.seq; ddbjgss8.seq;
ddbjgss80.seq; ddbjgss81.seq; ddbjgss82.seq; ddbjgss83.seq;
ddbjgss9.seq; /db/DDBJNEW.DATA/b/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/b/new_ddbjgss2.seq;
/db/DDBJNEW.DATA/b/new_ddbjgss3.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg52.seq; ddbjhtg6.seq; ddbjhtg7.seq;
ddbjhtg8.seq; ddbjhtg9.seq; /db/DDBJNEW.DATA/b/new_ddbjhtg1.seq;
/db/DDBJNEW.DATA/b/new_ddbjhtg2.seq; ddbjpat1.seq; ddbjpat10.seq;
ddbjpat11.seq; ddbjpat12.seq; ddbjpat13.seq; ddbjpat14.seq;
ddbjpat2.seq; ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq; ddbjpat6.seq;
ddbjpat7.seq; ddbjpat8.seq; ddbjpat9.seq;
/db/DDBJNEW.DATA/b/new_ddbjpat.seq; ddbjsts1.seq; ddbjsts2.seq;
ddbjsts3.seq; ddbjsts4.seq; /db/DDBJNEW.DATA/b/new_ddbjsts.seq;
ddbjsyn.seq; /db/DDBJNEW.DATA/b/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/b/new_est_atha1.seq; est_btra1.seq;
/db/DDBJNEW.DATA/b/new_est_btra1.seq; est_cele1.seq;
/db/DDBJNEW.DATA/b/new_est_cele1.seq; est_crei1.seq;
/db/DDBJNEW.DATA/b/new_est_crei1.seq; est_cint1.seq;
/db/DDBJNEW.DATA/b/new_est_cint1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/b/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/b/new_est_dmel1.seq; est_ggal1.seq;
/db/DDBJNEW.DATA/b/new_est_ggal1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/b/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/b/new_est_hum1.seq;
est_hvul1.seq; /db/DDBJNEW.DATA/b/new_est_hvul1.seq; est_lesc1.seq;
/db/DDBJNEW.DATA/b/new_est_lesc1.seq; est_mous1.seq; est_mous2.seq;
est_mous3.seq; /db/DDBJNEW.DATA/b/new_est_mous1.seq; est_mtru1.seq;
est_osat1.seq; /db/DDBJNEW.DATA/b/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/b/new_est_rnor1.seq; est_stro1.seq; est_taes1.seq;
/db/DDBJNEW.DATA/b/new_est_taes1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/b/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/b/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; est_rest4.seq; /db/DDBJNEW.DATA/b/new_est_rest1.seq
37,512,033 sequences; Z,232,934,461 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value N
AC097071|AC097071.5 Rattus norvegicus clone CH230-19P2, *** ... 36 0.14 6
BE808486|BE808486.1 213626 MARC 2BOV Bos taurus cDNA 5', mRN... 46 0.15 1
CB418181|CB418181.1 590968 MARC 6BOV Bos taurus cDNA 5', mRN... 46 0.15 1
CE323615|CE323615.1 tigr-gss-dog-17000360284591 Dog Library ... 34 0.26 2
AP005516|AP005516.5 Oryza sativa (japonica cultivar-group) g... 44 0.59 1
AC130964|AC130964.3 Rattus norvegicus clone CH230-5C23, *** ... 36 1.4 5
BX294109|BX294109.5 Zebrafish DNA sequence from clone CH211-... 34 2.3 4
AI962824|AI962824.1 wq43e06.x1 NCI_CGAP_GC6 Homo sapiens cDN... 42 2.3 1
CG927146|CG927146.1 MBEJT45TFB mth2 Medicago truncatula geno... 42 2.3 1
CR485954|CR485954.1 Medicago truncatula BAC ends cultivar Je... 42 2.3 1
BM481254|BM481254.1 533186 MARC 4BOV Bos taurus cDNA 5', mRN... 38 2.6 2
AC060228|AC060228.10 Homo sapiens chromosome 4 clone RP11-92... 34 2.7 5
AC144791|AC144791.1 Solanum demissum chromosome 5 BAC PGEC66... 34 6.8 6
AZ140035|AZ140035.1 SP_0006_A1_E09_T7 Strongylocentrotus pur... 30 8.2 2
AC141599|AC141599.1 Homo sapiens chromosome 16 clone RP11-13... 34 8.8 2
AZ152216|AZ152216.1 SP_0008_B2_A04_T7 Strongylocentrotus pur... 30 8.9 2
AL591371|AL591371.7 Human DNA sequence from clone RP13-45O10... 40 9.2 1
AF105037|AF105037.1 Murid herpesvirus 4 complete genome. 40 9.2 1
AC145849|AC145849.2 Felis catus clone RP86-379B13, WORKING D... 40 9.2 1
BH153320|BH153320.1 ENTTE50TF Entamoeba histolytica Sheared ... 40 9.2 1
CL717287|CL717287.1 OR_BBa0044D14.f OR_BBa Oryza rufipogon g... 40 9.2 1
U97553|U97553.1 Murine herpesvirus 68 strain WUMS, complete ... 40 9.2 1
BZ302664|BZ302664.1 KD1962.p1 Kluyveromyces delphensis Rando... 40 9.2 1
AC079118|AC079118.5 Homo sapiens BAC clone RP11-260K18 from ... 40 9.2 1
AF351273|AF351273.1 Gossypium hirsutum clone JESPR31 microsa... 40 9.2 1
>AC097071|AC097071.5 Rattus norvegicus clone CH230-19P2, *** SEQUENCING IN
PROGRESS ***, 20 unordered pieces.
Length = 390864
Score = 36.2 bits (18), Expect(6) = 0.14
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 43 taaaattggtttnaaatatcatatc 67
|||||||||||| ||||| ||||||
Sbjct: 384753 taaaattggtttaaaataccatatc 384729
Score = 36.2 bits (18), Expect(6) = 0.14
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 43 taaaattggtttnaaatatcatatc 67
|||||||||||| ||||| ||||||
Sbjct: 96222 taaaattggtttaaaataccatatc 96246
Score = 26.3 bits (13), Expect(6) = 0.14
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 103 atctcatgcaaag 115
|||||||||||||
Sbjct: 106158 atctcatgcaaag 106170
Score = 26.3 bits (13), Expect(6) = 0.14
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 88 tactcaaatttca 100
|||||||||||||
Sbjct: 375839 tactcaaatttca 375827
Score = 26.3 bits (13), Expect(6) = 0.14
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 103 atctcatgcaaag 115
|||||||||||||
Sbjct: 375083 atctcatgcaaag 375071
Score = 26.3 bits (13), Expect(6) = 0.14
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 88 tactcaaatttca 100
|||||||||||||
Sbjct: 105395 tactcaaatttca 105407
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Hits to DB: 3,113,002
Number of Sequences: 37512033
Number of extensions: 3113002
Number of successful extensions: 831201
Number of sequences better than 10.0: 50
length of query: 155
length of database: Z,232,934,461
effective HSP length: 21
effective length of query: 134
effective length of database: Y,445,181,768
effective search space: 5553654356912
effective search space used: 5553654356912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
Dictyostelium discoideum cDNA Project Home