Dictyostelium discoideum cDNA Clone AFI509

Sequence AFI509

AATAAATTAA TGTCAACATT AGCAGATAGA TTTTTAGATG ATTTTAATGA
TGGTGAAGAT GCATTAGTAG ATTATGGATT AGGAAAAAGT AATGAAGATA
ATAGTTTATC AAATGATTTC ATTAATGATT TTGGTGGTGA GGAAGATAAT
AACAATAATA ATAATGAAAA TTCCACTACT ACAACTACTA CAACTACTAC
TACAAATATA AATATAAAGG ATGATGATAA TGATACATTA ATGGGAGATC
AAGATGATTT AATGTTATCA GATGAAATGA TTGAAAAGAA ACAAATTGAA
TTAATTAATA AACATAAAGA TGCACCAATT GAATCAATTG CAAAATTAAA
TAATTCAAAT AAATTAACAT CATTATTAAC CTCGTGTAAA AAATCAAATG
ATAAAGAGTT TACCTGAAAA AGGTGTTAAA ACAGGTCAAG ATTCTGAAGA
ACATAAATTA ATCGTTGAAT GTAATCAAAT GGCTCAAGAG ATTCAACATG
AAATTTATTT AATTCATAAA TTTGGTTCGT GAAAGATATT CAAAAAAATT
CCCTGAAT-- --------AC ACAAGAAGAA TTAATGAGAG TAATTGATGC
ATGTGATATG GGTTTAGAAT TAGATTTACA TAAAAAAAAT ATATTACATT
ATTTAGAGAG TAGAATGACT TATATAGCAC CAAATTTATC AGTATTGATG
GGAAGTAGTA TAGCATCTAA ATTAATTGGT ATAGCAGGTT CAATTCAACA
ATTAGCAAAT ATTCCAGCTG GTCATTTACA AACATTAGGT GCTGATAAGA
AAGCATTGGC AGGTTTTAGT GGTATGTCAA ATAGAAAGTT TCAAATGGGT
TTAATTTCAC AATGTGATAT TGTAAAGAAA GCACCACCAT TCTTACAAGT
TAAAGCATTA CGTACTCTAA CTGGTAGAGT ATCGATTGCT GCAAGAGTTG
ATGCTCAACA AGATTCATCA TTCTATGGTG AAACAGGTAG ACAATATCGT
GATGAAATTT TAGCTAAAAT TGAGAAATGG CAAGAACCAC CACCTCAAAA
ACAAGATAAA GCACTACCTG CCCCTGAAGA GGGTAAGAGA ACCAAGAGAG
GTGGTAAAAA GGCTAGACTA TACAAACAAA AAAATTATGG TGGTTCTATG
ACTTCTGCTT CAACTAGTGG TCTTGCAAGT GTTGCCATTA CTCCTGTACA
AGGCTTACAA CTTTCTATTA CTCAAAATAT ACGTGAACAA GATAATAAAA
CTNAAAAATA TTTTTCATCT TCTAGTTTTA AAAATAAAAG AAAACTNAAC
AATAAATAAA A

Translated Amino Acid Sequence AFI509

*invnisr*ifr*f**w*rcisrlwirkk**r**fik*fh**fww*gr**q****kfhyy
nyynyyykykykg****yingrsr*fnvir*nd*ketn*in**t*rctn*inckik*fk*
iniiinlv*kik**rvylkkvlkqvkilknin*slnvikwlkrfnmkfi*FINLVRERYS
KKFPE---

---TQEELMRVIDACDMGLELDLHKKNILHYLESRMTYIAPNLSVLMGSSIASKLIGIAG
SIQQLANIPAGHLQTLGADKKALAGFSGMSNRKFQMGLISQCDIVKKAPPFLQVKALRTL
TGRVSIAARVDAQQDSSFYGETGRQYRDEILAKIEKWQEPPPQKQDKALPAPEEGKRTKR
GGKKARLYKQKNYGGSMTSASTSGLASVAITPVQGLQLSITQNIREQDNKTXKYFSSSSF
KNKRKLNNK*

Homology AFI509 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


AFI509 (AFI509Q) /CSM/AF/AFI5-A/AFI509Q.Seq.d/                       1994   0.0
AFO514 (AFO514Q) /CSM/AF/AFO5-A/AFO514Q.Seq.d/                        872   0.0
SFC337 (SFC337Q) /CSM/SF/SFC3-B/SFC337Q.Seq.d/                        791   0.0
CFI387 (CFI387Q) /CSM/CF/CFI3-D/CFI387Q.Seq.d/                        710   0.0
SFG687 (SFG687Q) /CSM/SF/SFG6-D/SFG687Q.Seq.d/                        698   0.0
SFB226 (SFB226Q) /CSM/SF/SFB2-B/SFB226Q.Seq.d/                        638   0.0
AFA686 (AFA686Q) /CSM/AF/AFA6-D/AFA686Q.Seq.d/                        638   0.0
VSG271 (VSG271Q) /CSM/VS/VSG2-C/VSG271Q.Seq.d/                        337   3e-91
VFO364 (VFO364Q) /CSM/VF/VFO3-C/VFO364Q.Seq.d/                        321   2e-86
AFA415 (AFA415Q) /CSM/AF/AFA4-A/AFA415Q.Seq.d/                        178   1e-43

Homology AFI509 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromo...    44   2e-12  16
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          38   8e-12  33
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 ...    40   1e-11  19
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, comp...    44   8e-11  15
AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clon...    46   4e-10  16
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 ma...    48   5e-10  6
AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clon...    40   9e-10  16
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromo...    40   2e-09  15
AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clon...    40   2e-09  16
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 ma...    44   3e-09  5

Homology AFI509 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC150800_1(AC150800|pid:none) Medicago truncatula chromosome 7 c...   167   9e-40
AK066109_1(AK066109|pid:none) Oryza sativa Japonica Group cDNA c...   156   3e-36
CP000584_134(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...   155   6e-36
AB463201_1(AB463201|pid:none) Synthetic construct DNA, clone: pF...   154   8e-36
AK301709_1(AK301709|pid:none) Homo sapiens cDNA FLJ59251 complet...   154   1e-35
(Q8WWY3) RecName: Full=U4/U6 small nuclear ribonucleoprotein Prp...   154   1e-35
AY040822_1(AY040822|pid:none) Homo sapiens U4/U6 snRNP-associate...   154   1e-35
AB593024_1(AB593024|pid:none) Homo sapiens PRPF31 mRNA for U4/U6...   154   1e-35
(Q6NVP6) RecName: Full=U4/U6 small nuclear ribonucleoprotein Prp...   154   1e-35
AK005294_1(AK005294|pid:none) Mus musculus adult male cerebellum...   153   2e-35

Homology AFI509 vs Genome