Homology AFB604 vs DNA
Query= AFB604 (AFB604Q) /CSM/AF/AFB6-A/AFB604Q.Seq.d/
(1209 letters)
Database: ddbj_A
116,720,237 sequences; 112,394,932,676 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AY368270) Dictyostelium discoideum Rac-binding component of... 1146 0.0 1
(BJ323957) Dictyostelium discoideum cDNA clone:dda4g02, 5' e... 1146 0.0 1
(BJ442574) Dictyostelium discoideum cDNA clone:ddv50f08, 3' ... 924 0.0 2
(BJ446210) Dictyostelium discoideum cDNA clone:ddv62c01, 3' ... 924 0.0 2
(BJ340834) Dictyostelium discoideum cDNA clone:dda4g02, 3' e... 924 0.0 2
(BJ343402) Dictyostelium discoideum cDNA clone:dda16a03, 3' ... 924 0.0 2
(BJ353576) Dictyostelium discoideum cDNA clone:dda50p14, 3' ... 918 0.0 2
(BJ439224) Dictyostelium discoideum cDNA clone:ddv39e22, 3' ... 918 0.0 2
(BJ409444) Dictyostelium discoideum cDNA clone:dds41c23, 3' ... 910 0.0 2
(BJ353874) Dictyostelium discoideum cDNA clone:dda51p13, 3' ... 880 0.0 2
(BJ409431) Dictyostelium discoideum cDNA clone:dds41p13, 3' ... 841 0.0 2
(BJ352973) Dictyostelium discoideum cDNA clone:dda48e13, 3' ... 821 0.0 2
(C23738) Dictyostelium discoideum gamete cDNA, clone FC-AD16. 860 0.0 1
(BJ351790) Dictyostelium discoideum cDNA clone:dda44i17, 3' ... 670 0.0 2
(BJ326296) Dictyostelium discoideum cDNA clone:dda16a03, 5' ... 511 e-140 1
(AU071324) Dictyostelium discoideum slug cDNA, clone SSB236. 476 e-129 1
(BJ336318) Dictyostelium discoideum cDNA clone:dda53a16, 5' ... 289 e-121 2
(BJ424341) Dictyostelium discoideum cDNA clone:ddv52k03, 5' ... 414 e-111 1
(BJ405110) Dictyostelium discoideum cDNA clone:dds30k16, 3' ... 349 2e-91 1
(BJ437077) Dictyostelium discoideum cDNA clone:ddv33j04, 3' ... 258 5e-64 1
(GR579989) CBZY2474.g1 CBZY Dictyostelium purpureum 18 hr st... 170 4e-59 2
(GR579988) CBZY2474.b1 CBZY Dictyostelium purpureum 18 hr st... 137 4e-53 2
(C23739) Dictyostelium discoideum gamete cDNA, clone FC-AD16. 72 6e-08 1
(EC756804) PPE00004330 Agencourt Biosciences Agen-0020 Non-n... 48 0.014 2
(BJ440840) Dictyostelium discoideum cDNA clone:ddv44k22, 3' ... 52 0.056 1
(AC169550) Bos taurus clone CH240-223N3, WORKING DRAFT SEQUE... 48 0.88 1
(BI512543) BB160009B10C07.5 Bee Brain Normalized Library, BB... 48 0.88 1
(FF562093) MUSRH08TF MUSR Musa acuminata cDNA 5', mRNA seque... 40 3.2 2
(AF336378) Mus musculus Kel blood group protein (Kel), epith... 46 3.5 1
(AC117678) Mus musculus chromosome 6, clone RP23-421M9, comp... 46 3.5 1
(EF197823) Lotus uliginosus anthocyanidin reductase (ANR) mR... 46 3.5 1
(DL005630) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES. 46 3.5 1
(CS459555) Sequence 36 from Patent WO2006117596. 46 3.5 1
(AC092941) Homo sapiens 3 BAC RP11-132N15 (Roswell Park Canc... 46 3.5 1
(AC068706) Homo sapiens BAC clone RP11-703O4 from 2, complet... 46 3.5 1
(AC161843) Bos taurus clone CH240-101D9, WORKING DRAFT SEQUE... 46 3.5 1
(AC066603) Homo sapiens chromosome 3 clone RP11-690C8 map 3p... 46 3.5 1
(AC208568) Zea mays chromosome 5 clone ZMMBBb-333C20; ZMMBBb... 46 3.5 1
(AC208408) Zea mays chromosome 5 clone CH201-131J2; ZMMBBc01... 46 3.5 1
(AC173386) Bos taurus clone CH240-526J11, WORKING DRAFT SEQU... 46 3.5 1
(AC168499) Strongylocentrotus purpuratus clone R3-3117D2, WO... 46 3.5 1
(DX481939) Cpl23603 Papaya Genomic DNA BAC Library Carica pa... 46 3.5 1
(DX463742) Cpl05531 Papaya Genomic DNA BAC Library Carica pa... 46 3.5 1
(CT027573) Zebrafish DNA sequence from clone DKEY-177O9 in l... 32 6.3 2
(BX248089) Zebrafish DNA sequence from clone DKEY-21K10 in l... 32 6.3 2
(BX569791) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 6.3 2
(AC159043) Bos taurus clone CH240-39H22, WORKING DRAFT SEQUE... 32 6.5 2
(AC173999) Pan troglodytes BAC clone CH251-530E14 from chrom... 38 8.4 2
(AC211529) Homo sapiens BAC clone CH17-165B24 from chromosom... 38 9.4 2
>(AY368270) Dictyostelium discoideum Rac-binding component of SCAR regulatory
complex (pirA) mRNA, complete cds.
Length = 4011
Score = 1146 bits (578), Expect = 0.0
Identities = 578/578 (100%)
Strand = Plus / Plus
Query: 1 tagattatgccatcagtagattcgaagcttgcgatttaacatcgatcgttgaattggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2315 tagattatgccatcagtagattcgaagcttgcgatttaacatcgatcgttgaattggaga 2374
Query: 61 cccaaatcgccaatatcaaactcactcacaaactcttatcagaatactttgatatagatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2375 cccaaatcgccaatatcaaactcactcacaaactcttatcagaatactttgatatagatc 2434
Query: 121 cattcgaatcaatctttaatgaaatcaatgagtccacttctttggtctcttatcatggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2435 cattcgaatcaatctttaatgaaatcaatgagtccacttctttggtctcttatcatggtc 2494
Query: 181 gtattgtacttcatattatctttgaattggtggccgatttcgctccaaactataccttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2495 gtattgtacttcatattatctttgaattggtggccgatttcgctccaaactataccttca 2554
Query: 241 attcaatcactcaacgttttataaaggctccatacactttcaccgaagaattgaaacgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2555 attcaatcactcaacgttttataaaggctccatacactttcaccgaagaattgaaacgtg 2614
Query: 301 atgcacttccaaaaactaatcctgtctttttgtttggtaataaatatttgaatgctgcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2615 atgcacttccaaaaactaatcctgtctttttgtttggtaataaatatttgaatgctgcct 2674
Query: 361 atgcaaactcgatcgaactctacaagaatttcattggtgtaccacatattcaatcaatcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2675 atgcaaactcgatcgaactctacaagaatttcattggtgtaccacatattcaatcaatcc 2734
Query: 421 ttagaatcgttggtaaaaagaatcttcctttgatcgttgctgaggtattacgtaatattg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2735 ttagaatcgttggtaaaaagaatcttcctttgatcgttgctgaggtattacgtaatattg 2794
Query: 481 aaatcaagatcaccaatgttctctcaccatacgttagtgaattacttcaaggtatgcctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2795 aaatcaagatcaccaatgttctctcaccatacgttagtgaattacttcaaggtatgcctg 2854
Query: 541 catcgactaaattaccaatctatgattatggtactgaa 578
||||||||||||||||||||||||||||||||||||||
Sbjct: 2855 catcgactaaattaccaatctatgattatggtactgaa 2892
Score = 924 bits (466), Expect(2) = 0.0
Identities = 466/466 (100%)
Strand = Plus / Plus
Query: 591 tcttcaatccttaatattgttcgtcatgattggtctggtgctcctccagataatggtgtc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3304 tcttcaatccttaatattgttcgtcatgattggtctggtgctcctccagataatggtgtc 3363
Query: 651 atttgcgttgattcctcaacagagttttatcgtttatggagtgcccttcaatttgtaatc 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3364 atttgcgttgattcctcaacagagttttatcgtttatggagtgcccttcaatttgtaatc 3423
Query: 711 tgttggccactctcaaatgaaaatgataaatctttccatgaattgtttggtgatggttta 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3424 tgttggccactctcaaatgaaaatgataaatctttccatgaattgtttggtgatggttta 3483
Query: 771 atgtgggccggttgttcattgatccatttccttggtcaacaatatcgtttcgaattattt 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3484 atgtgggccggttgttcattgatccatttccttggtcaacaatatcgtttcgaattattt 3543
Query: 831 gatttctgttatcacattttaaatgtagaagaggctgctgctgttcgttcagataaacct 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3544 gatttctgttatcacattttaaatgtagaagaggctgctgctgttcgttcagataaacct 3603
Query: 891 gccttaaagaatttctttaagaatgctcaaatcatcaaagatatcaataatcaaatcttt 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3604 gccttaaagaatttctttaagaatgctcaaatcatcaaagatatcaataatcaaatcttt 3663
Query: 951 agtatactcaatacatattgtccaccaccaccaccttctaatatgatcctttcaccacct 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3664 agtatactcaatacatattgtccaccaccaccaccttctaatatgatcctttcaccacct 3723
Query: 1011 gctactgaacaagctgaacaatttatagttacaaccactgttgaag 1056
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3724 gctactgaacaagctgaacaatttatagttacaaccactgttgaag 3769
Score = 71.9 bits (36), Expect(2) = 0.0
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1120 attctggaagtagtttatcactttctgctgctggtg 1155
||||||||||||||||||||||||||||||||||||
Sbjct: 3833 attctggaagtagtttatcactttctgctgctggtg 3868
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 116720237
Number of Hits to DB: 1,362,813,150
Number of extensions: 79475486
Number of successful extensions: 6972131
Number of sequences better than 10.0: 49
Length of query: 1209
Length of database: 112,394,932,676
Length adjustment: 24
Effective length of query: 1185
Effective length of database: 109,593,646,988
Effective search space: 129868471680780
Effective search space used: 129868471680780
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home