Homology AFA105 vs Protein
Query= AFA105 (AFA105Q) /CSM/AF/AFA1-A/AFA105Q.Seq.d/
(320 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC135208_4(AC135208|pid:none) Oryza sativa (japonica cultivar-gr... 44 0.003
GQ165934_1(GQ165934|pid:none) TSA: Lycoris longituba LlTF-LIM-4 ... 42 0.008
AC160095_6(AC160095|pid:none) Solanum lycopersicum clone BB, com... 41 0.019
EU186001_1(EU186001|pid:none) Lilium longiflorum LIM1 mRNA, comp... 41 0.025
BT068434_1(BT068434|pid:none) Zea mays full-length cDNA clone ZM... 41 0.025
AM475696_4(AM475696|pid:none) Vitis vinifera contig VV78X042996.... 40 0.032
AB079511_1(AB079511|pid:none) Populus kitakamiensis Pklim1 gene ... 40 0.032
EU482903_1(EU482903|pid:none) Pinus taeda LIM2 transcription fac... 40 0.032
EF145390_1(EF145390|pid:none) Populus trichocarpa clone WS01124_... 40 0.032
AF116851_1(AF116851|pid:none) Nicotiana tabacum LIM domain prote... 40 0.032
EF035039_1(EF035039|pid:none) Populus tremula x Populus alba LIM... 40 0.032
AF187103_1(AF187103|pid:none) Helianthus annuus LIM domain prote... 40 0.042
EF035035_1(EF035035|pid:none) Populus tremula x Populus alba str... 40 0.042
EF147317_1(EF147317|pid:none) Populus trichocarpa clone WS0122_J... 40 0.042
AB079513_1(AB079513|pid:none) Nicotiana tabacum Ntlim1 mRNA for ... 40 0.042
GQ165987_1(GQ165987|pid:none) TSA: Lycoris longituba LlTF-LIM-6 ... 40 0.042
(P29675) RecName: Full=Pollen-specific protein SF3; &AF187104_1... 40 0.042
EU496813_1(EU496813|pid:none) Nicotiana tabacum LIM domain prote... 40 0.055
GQ166106_1(GQ166106|pid:none) TSA: Lycoris longituba LlTF-LIM-8 ... 40 0.055
EF082885_1(EF082885|pid:none) Picea sitchensis clone WS02728_E15... 40 0.055
AF187105_1(AF187105|pid:none) Helianthus annuus LIM domain prote... 39 0.071
GQ165916_1(GQ165916|pid:none) TSA: Lycoris longituba LlTF-LIM-3 ... 39 0.071
EU957376_1(EU957376|pid:none) Zea mays clone 1590177 pollen-spec... 39 0.071
BT092394_1(BT092394|pid:none) Soybean clone JCVI-FLGm-10H10 unkn... 39 0.071
BT090223_1(BT090223|pid:none) Soybean clone JCVI-FLGm-3P4 unknow... 39 0.071
EF148212_1(EF148212|pid:none) Populus trichocarpa clone WS0128_M... 39 0.071
AF116849_1(AF116849|pid:none) Helianthus annuus. 39 0.071
EU962065_1(EU962065|pid:none) Zea mays clone 239982 pollen-speci... 39 0.093
BT091434_1(BT091434|pid:none) Soybean clone JCVI-FLGm-7P22 unkno... 39 0.093
BT055434_1(BT055434|pid:none) Zea mays full-length cDNA clone ZM... 39 0.093
EF035036_1(EF035036|pid:none) Populus tremula x Populus alba str... 39 0.093
EF035040_1(EF035040|pid:none) Populus tremula x Populus alba LIM... 39 0.093
BT091376_1(BT091376|pid:none) Soybean clone JCVI-FLGm-7H10 unkno... 39 0.093
EF146377_1(EF146377|pid:none) Populus trichocarpa clone WS0117_L... 39 0.093
AB023479_1(AB023479|pid:none) Nicotiana tabacum mRNA for transcr... 39 0.093
AC125482_26(AC125482|pid:none) Medicago truncatula clone mth2-15... 39 0.093
AM469183_1(AM469183|pid:none) Vitis vinifera contig VV78X221882.... 39 0.093
BT093203_1(BT093203|pid:none) Soybean clone JCVI-FLGm-17A9 unkno... 39 0.093
EF035038_1(EF035038|pid:none) Populus tremula x Populus alba LIM... 39 0.12
GQ901953_1(GQ901953|pid:none) Hevea brasiliensis LIM1 mRNA, comp... 39 0.12
AC004665_22(AC004665|pid:none) Arabidopsis thaliana chromosome 2... 39 0.12
AF049917_1(AF049917|pid:none) Petunia x hybrida PGPS/D1 (PGPS/D1... 39 0.12
AF197568_1(AF197568|pid:none) Nicotiana tabacum pollen specific ... 39 0.12
AF184109_1(AF184109|pid:none) Nicotiana tabacum LIM domain prote... 39 0.12
AF047353_1(AF047353|pid:none) Helianthus annuus LIM domain prote... 38 0.16
BT089473_1(BT089473|pid:none) Soybean clone JCVI-FLGm-2E17 unkno... 38 0.16
AF002109_4(AF002109|pid:none) Arabidopsis thaliana chromosome 2 ... 38 0.16
AB097518_1(AB097518|pid:none) Macaca fascicularis brain cDNA clo... 38 0.16
AB079512_1(AB079512|pid:none) Nicotiana tabacum Ntlim1 gene for ... 38 0.21
AC009273_19(AC009273|pid:none) Sequence of BAC T1N6 from Arabido... 38 0.21
EF119718_1(EF119718|pid:none) Homo sapiens xeplin variant 2 (CMY... 38 0.21
BC172832_1(BC172832|pid:none) Synthetic construct Mus musculus c... 38 0.21
AK317367_1(AK317367|pid:none) Arabidopsis thaliana AT1G01780 mRN... 38 0.21
AK122889_1(AK122889|pid:none) Homo sapiens cDNA FLJ16539 fis, cl... 38 0.21
AF443117_1(AF443117|pid:none) Gossypium hirsutum LIM domain prot... 38 0.21
T50694(T50694) transcription factor L2 [imported] - Arabidopsis ... 37 0.27
AK375771_1(AK375771|pid:none) Hordeum vulgare subsp. vulgare mRN... 37 0.27
EF035037_1(EF035037|pid:none) Populus tremula x Populus alba LIM... 37 0.27
AF184886_1(AF184886|pid:none) Nicotiana tabacum LIM domain prote... 37 0.27
AK317129_1(AK317129|pid:none) Arabidopsis thaliana AT3G55770 mRN... 37 0.27
AF370574_1(AF370574|pid:none) Arabidopsis thaliana transcription... 37 0.27
BT053270_1(BT053270|pid:none) Medicago truncatula clone MTYFP_FQ... 37 0.46
AC123899_21(AC123899|pid:none) Medicago truncatula clone mth2-33... 36 0.60
DQ213126_1(DQ213126|pid:none) Taeniopygia guttata clone 0058P002... 36 0.79
CP002686_5841(CP002686|pid:none) Arabidopsis thaliana chromosome... 35 1.0
BT061506_1(BT061506|pid:none) Zea mays full-length cDNA clone ZM... 35 1.0
AK319026_1(AK319026|pid:none) Arabidopsis thaliana AT3G55770 mRN... 35 1.0
GU575308_1(GU575308|pid:none) Solanum nigrum transcription facto... 35 1.0
BT036854_1(BT036854|pid:none) Zea mays full-length cDNA clone ZM... 35 1.3
EU966603_1(EU966603|pid:none) Zea mays clone 295565 unknown mRNA. 35 1.3
AB493659_1(AB493659|pid:none) Arabidopsis thaliana At3g61230 mRN... 35 1.3
BT039056_1(BT039056|pid:none) Zea mays full-length cDNA clone ZM... 35 1.3
AL137898_13(AL137898|pid:none) Arabidopsis thaliana DNA chromoso... 35 1.3
AJ721104_1(AJ721104|pid:none) Gallus gallus mRNA for hypothetica... 35 1.3
BT062488_1(BT062488|pid:none) Zea mays full-length cDNA clone ZM... 35 1.8
BC096905_1(BC096905|pid:none) Danio rerio similar to Epithelial ... 34 2.3
AK373010_1(AK373010|pid:none) Hordeum vulgare subsp. vulgare mRN... 33 3.9
BT094606_1(BT094606|pid:none) Soybean clone JCVI-FLGm-14D2 unkno... 33 3.9
AF520713_1(AF520713|pid:none) Drosophila melanogaster MICAL shor... 33 5.1
AF520714_1(AF520714|pid:none) Drosophila melanogaster MICAL medi... 33 5.1
AE014297_1187(AE014297|pid:none) Drosophila melanogaster chromos... 33 5.1
AE014297_1186(AE014297|pid:none) Drosophila melanogaster chromos... 33 5.1
CP001328_545(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 33 6.7
(Q9BT23) RecName: Full=LIM domain-containing protein 2; &AK0923... 33 6.7
BC088558_1(BC088558|pid:none) Xenopus tropicalis hypothetical LO... 32 8.7
>AC135208_4(AC135208|pid:none) Oryza sativa (japonica
cultivar-group) chromosome 3 clone OJ1364E02, complete
sequence. &AK058507_1(AK058507|pid:none)
&AP008209_1013(AP008209|pid:none)
Length = 196
Score = 43.9 bits (102), Expect = 0.003
Identities = 22/54 (40%), Positives = 26/54 (48%)
Frame = +3
Query: 150 GTXEKXTXCAKTVYLTXXXXXXXXXXXXTFHKLCLKXXHCXLTLSLGNYAXLXG 311
GT +K C KTVY FH+ C K HC TLSLGNY+ + G
Sbjct: 4 GTQQKCKVCTKTVY----PMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEG 53
Score = 34.3 bits (77), Expect = 2.3
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = +3
Query: 150 GTXEKXTXCAKTVYLTXXXXXXXXXXXXTFHKLCLKXXHCXLTLSLGNYAXLXG 311
GT EK C+KT Y +HK C K H +S NYA L G
Sbjct: 103 GTQEKCATCSKTAY----PLEKVTVEGQAYHKSCFKCSHGGCAISPSNYAALEG 152
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 383,551,565
Number of extensions: 4345198
Number of successful extensions: 9295
Number of sequences better than 10.0: 85
Number of HSP's gapped: 9164
Number of HSP's successfully gapped: 111
Length of query: 106
Length of database: 1,732,582,204
Length adjustment: 74
Effective length of query: 32
Effective length of database: 1,336,740,442
Effective search space: 42775694144
Effective search space used: 42775694144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)
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